Detailed information for compound 1188894

Basic information

Technical information
  • TDR Targets ID: 1188894
  • Name: 1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymeth yl)oxolan-2-yl]-3,4-dihydropyrimidin-2-one
  • MW: 230.218 | Formula: C9H14N2O5
  • H donors: 4 H acceptors: 4 LogP: -1.96 Rotable bonds: 2
    Rule of 5 violations (Lipinski): 1
  • SMILES: OC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)N1C=CCNC1=O
  • InChi: 1S/C9H14N2O5/c12-4-5-6(13)7(14)8(16-5)11-3-1-2-10-9(11)15/h1,3,5-8,12-14H,2,4H2,(H,10,15)/t5-,6-,7-,8-/m1/s1
  • InChiKey: NVRAAJMSMZQKRW-WCTZXXKLSA-N  


Substructure search Similarity search

Network

Hover on a compound node to display the structore

Synonyms

  • 1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]-3,4-dihydropyrimidin-2-one
  • 1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)-2-tetrahydrofuranyl]-3,4-dihydropyrimidin-2-one
  • 1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-methylol-tetrahydrofuran-2-yl]-3,4-dihydropyrimidin-2-one
  • 3,4-DIHYDRO-1H-PYRIMIDIN-2-ONE NUCLEOSIDE
  • DHZ

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Mus musculus cytidine deaminase Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Leishmania major cytidine deaminase-like protein Get druggable targets OG5_127381 All targets in OG5_127381
Echinococcus multilocularis cytidine deaminase Get druggable targets OG5_127381 All targets in OG5_127381
Trichomonas vaginalis cytidine deaminase, putative Get druggable targets OG5_127381 All targets in OG5_127381
Toxoplasma gondii cytidine and deoxycytidylate deaminase zinc-binding region domain-containing protein Get druggable targets OG5_127381 All targets in OG5_127381
Brugia malayi cytidine deaminase, identical Get druggable targets OG5_127381 All targets in OG5_127381
Onchocerca volvulus Get druggable targets OG5_127381 All targets in OG5_127381
Mycobacterium ulcerans cytidine deaminase Get druggable targets OG5_127381 All targets in OG5_127381
Onchocerca volvulus Get druggable targets OG5_127381 All targets in OG5_127381
Leishmania infantum cytidine deaminase-like protein Get druggable targets OG5_127381 All targets in OG5_127381
Trypanosoma congolense cytidine deaminase, putative Get druggable targets OG5_127381 All targets in OG5_127381
Entamoeba histolytica cytidine deaminase, putative Get druggable targets OG5_127381 All targets in OG5_127381
Leishmania braziliensis cytidine deaminase-like protein Get druggable targets OG5_127381 All targets in OG5_127381
Leishmania mexicana cytidine deaminase-like protein Get druggable targets OG5_127381 All targets in OG5_127381
Echinococcus granulosus cytidine deaminase Get druggable targets OG5_127381 All targets in OG5_127381
Neospora caninum cytidine deaminase, putative Get druggable targets OG5_127381 All targets in OG5_127381
Trypanosoma brucei cytidine deaminase Get druggable targets OG5_127381 All targets in OG5_127381
Mycobacterium leprae PROBABLE CYTIDINE DEAMINASE CDD (CYTIDINE AMINOHYDROLASE) (CYTIDINE NUCLEOSIDE DEAMINASE) Get druggable targets OG5_127381 All targets in OG5_127381
Trypanosoma cruzi cytidine deaminase-like protein, putative Get druggable targets OG5_127381 All targets in OG5_127381
Leishmania donovani cytidine deaminase-like protein Get druggable targets OG5_127381 All targets in OG5_127381
Trypanosoma brucei gambiense cytidine deaminase, putative Get druggable targets OG5_127381 All targets in OG5_127381
Mycobacterium tuberculosis Probable cytidine deaminase Cdd (cytidine aminohydrolase) (cytidine nucleoside deaminase) Get druggable targets OG5_127381 All targets in OG5_127381
Giardia lamblia Cytidine deaminase Get druggable targets OG5_127381 All targets in OG5_127381
Trypanosoma cruzi cytidine deaminase-like protein Get druggable targets OG5_127381 All targets in OG5_127381
Trichomonas vaginalis cytidine deaminase, putative Get druggable targets OG5_127381 All targets in OG5_127381
By sequence similarity to non orthologous known druggable targets
No druggable targets predicted by sequence similarity
Obtained from network model

Ranking Plot

Putative Targets List

Species Potential target Raw Global Species
Plasmodium falciparum bifunctional dihydrofolate reductase-thymidylate synthase 0.7807 0.9912 0.5
Trypanosoma cruzi dihydrofolate reductase-thymidylate synthase, putative 0.1873 0.2314 0.2335
Brugia malayi hypothetical protein 0.1873 0.2314 0.2314
Loa Loa (eye worm) thymidylate synthase 0.3936 0.4956 0.4923
Plasmodium vivax bifunctional dihydrofolate reductase-thymidylate synthase, putative 0.7807 0.9912 0.5
Loa Loa (eye worm) glycosyl hydrolase family 31 protein 0.0159 0.0121 0.0055
Echinococcus multilocularis thymidylate synthase 0.3936 0.4956 0.4956
Brugia malayi thymidylate synthase 0.3936 0.4956 0.4956
Mycobacterium leprae PROBABLE THYMIDYLATE SYNTHASE THYA (TS) (TSASE) 0.3936 0.4956 0.4956
Trichomonas vaginalis conserved hypothetical protein 0.1873 0.2314 1
Onchocerca volvulus 0.3936 0.4956 1
Toxoplasma gondii bifunctional dihydrofolate reductase-thymidylate synthase 0.7807 0.9912 1
Echinococcus granulosus thymidylate synthase 0.3936 0.4956 0.4956
Trypanosoma brucei dihydrofolate reductase-thymidylate synthase 0.7807 0.9912 1
Trypanosoma cruzi dihydrofolate reductase-thymidylate synthase 0.7807 0.9912 1
Leishmania major dihydrofolate reductase-thymidylate synthase 0.7807 0.9912 1
Brugia malayi Glycosyl hydrolases family 31 protein 0.0159 0.0121 0.0121
Mycobacterium tuberculosis Hypothetical protein 0.1873 0.2314 0.2314
Mycobacterium ulcerans thymidylate synthase 0.3936 0.4956 0.4956
Brugia malayi MH2 domain containing protein 0.0117 0.0066 0.0066
Echinococcus multilocularis lysosomal alpha glucosidase 0.0159 0.0121 0.0121
Onchocerca volvulus 0.0092 0.0035 0.0071
Mycobacterium tuberculosis Probable thymidylate synthase ThyA (ts) (TSASE) 0.3936 0.4956 0.4956
Echinococcus multilocularis lysosomal alpha glucosidase 0.0159 0.0121 0.0121
Echinococcus granulosus lysosomal alpha glucosidase 0.0159 0.0121 0.0121
Schistosoma mansoni bifunctional dihydrofolate reductase-thymidylate synthase 0.3936 0.4956 0.4909

Activities

Activity type Activity value Assay description Source Reference
Ki (binding) = 0.000004 M Compound was tested for the inhibitory constant for mouse kidney cytidine deaminase ChEMBL. 3735306

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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