Mtb Murphy & Brown data (2007) for Mtu gene expression and attenuation rankings

Posted by Dany Shanmugam on 2010-07-12 20:14:47

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This data set is obtained from the supplementary data for of the concerned article. Here genes were scored for 2 parameters - 1) expression (+ve for UP and -ve for down). We combined these 2 scores to get a single value; and 2) attenuation. The final combination of the the scores for these 2 parameters was obtained (see the union result). As the intention was to combine this data with the ranking provided by Hasan et al (2006) and the dynamic range of the scores associated with these 2 scores was very different (597 to -2119 in case of Hasan data and 23 to -17 in case of Murphy & Brown), the M&B data was multiplied by a factor of 10 to generate score values ranging between 234 to -172 (see uploaded Query 4)

Queries in this set

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  Mtb_M&B_GeneExpression_scores WARNING: we were unable to find some of the genes in your list! (3998 records). Show parameters.

  Mtb_M&B_GeneAttenuation_scores WARNING: we were unable to find some of the genes in your list! (3998 records). Show parameters.

  Union of Mtb Murphy& Brown data for gene expression and attenuation (3998 records). Show parameters.

  Mtb_M&B_Gene_Attenuation+expression_scores_mutliplied by 10 WARNING: we were unable to find some of the genes in your list! (3998 records). Show parameters.