Detailed view for LmjF.06.0090

Basic information

TDR Targets ID: 28419
Leishmania major, ATP-binding cassette protein subfamily G, member 2, putative
Source Database / ID:  TriTrypDB  GeneDB

pI: 9.0718 | Length (AA): 663 | MW (Da): 73948 | Paralog Number: 1

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 6

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00005   ABC transporter
PF01061   ABC-2 type transporter

Gene Ontology

Mouse over links to read term descriptions.
GO:0016020   membrane  
GO:0017111   nucleoside-triphosphatase activity  
GO:0016887   ATPase activity  
GO:0005524   ATP binding  
GO:0000166   nucleotide binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 9 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
27 293 1z2r (A) 273 561 22.00 0 0.98 0.59 0.49
66 377 1z47 (A) 11 316 21.00 0 1 0.69 0.03
66 300 1ji0 (A) 2 228 23.00 0 1 0.72 -1.01
31 293 5kpj (A) 994 1252 24.00 0 1 0.629182 0.34
34 293 5idv (A) 24 257 28.00 0.0000000022 1 0.595257 0.3
63 299 4wbs (B) 25 259 23.00 0 1 0.724666 -1
71 651 5do7 (B) 32 662 27.00 0 1 1.03182 0.81
75 649 5do7 (A) 40 644 26.00 0 1 1.13077 0.27
203 292 2awn (D) 49 216 34.00 0.00072 0.98 0.353847 0.83

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Lower 0-20% percentile amastigotes, metacyclic. Fernandes MC
Show/Hide expression data references
  • Fernandes MC Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures.

Orthologs

Ortholog group members (OG5_135275)

Species Accession Gene Product
Drosophila melanogaster Dmel_CG4314   scarlet
Leishmania braziliensis LbrM.06.0010   ABC transporter, putative
Leishmania braziliensis LbrM.06.0080   ABC transporter, putative
Leishmania infantum LinJ.06.0090   ATP-binding cassette protein subfamily G, member 2, putative
Leishmania infantum LinJ.06.0080   ATP-binding cassette protein subfamily G, member 1, putative
Leishmania major LmjF.06.0090   ATP-binding cassette protein subfamily G, member 2, putative
Leishmania major LmjF.06.0080   ATP-binding cassette protein subfamily G, member 1, putative
Leishmania mexicana LmxM.06.0080   ATP-binding cassette protein subfamily G, member 1, putative
Leishmania mexicana LmxM.06.0090   ATP-binding cassette protein subfamily G, member 2, putative
Trypanosoma brucei gambiense Tbg972.10.9440   ABC transporter, putative
Trypanosoma brucei Tb927.10.7700   ATP-binding cassette protein subfamily G
Trypanosoma congolense TcIL3000_10_6590   ATP-binding cassette protein subfamily G
Trypanosoma cruzi TcCLB.506249.70   ATP-binding cassette protein subfamily G
Trypanosoma cruzi TcCLB.508231.190   ATP-binding cassette protein subfamily G

Essentiality

LmjF.06.0090 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb927.10.7700 Trypanosoma brucei significant gain of fitness in bloodstream forms (3 days) alsford
Tb927.10.7700 Trypanosoma brucei significant gain of fitness in bloodstream forms (6 days) alsford
Tb927.10.7700 Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb927.10.7700 Trypanosoma brucei significant gain of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.5

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

No user comments are available for this gene. Log in to add comments, or register.

Enter your comment

User ()
Gene identifier LmjF.06.0090 (Leishmania major), ATP-binding cassette protein subfamily G, member 2, putative
Title for this comment
Comment