Detailed view for Smp_000050

Basic information

TDR Targets ID: 289385
Schistosoma mansoni, transient receptor potential cation channel
Source Database / ID:  GeneDB

pI: 7.5709 | Length (AA): 1376 | MW (Da): 156341 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 4

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

No Pfam domain information for this protein.

Gene Ontology

Mouse over links to read term descriptions.
GO:0005515   protein binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 7 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
2 89 4dui (A) 46 132 40.00 0.00041 0.99 0.529353 -0.44
5 76 4lsz (E) 49 118 36.00 0.073 1 0.589726 -1.05
5 159 5leb (A) 49 207 30.00 0.000021 1 0.478045 -0.23
38 111 3c5r (A) 428 501 32.00 0.54 0.58 0.512179 -0.88
965 1121 5sxj (B) 407 597 13.00 0.63 0.08 0.257999 -0.17
1085 1364 1q33 (A) 60 344 22.00 0 0.98 0.443388 0.07
1101 1354 1q33 (A) 66 334 28.00 0.00000000009 0.67 0.364993 0.49

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_242513)

Species Accession Gene Product
Echinococcus granulosus EgrG_000225100   transient receptor potential cation channel
Echinococcus granulosus EgrG_000224900   transient receptor potential cation channel
Echinococcus granulosus EgrG_000334200   transient receptor potential cation channel
Echinococcus multilocularis EmuJ_000334200   transient receptor potential cation channel
Echinococcus multilocularis EmuJ_000224900   transient receptor potential cation channel
Echinococcus multilocularis EmuJ_000225100   transient receptor potential cation channel
Schistosoma japonicum Sjp_0078990   Transient receptor potential cation channel subfamily M member 8, putative
Schistosoma japonicum Sjp_0109060   IPR002110,Ankyrin,domain-containing
Schistosoma mansoni Smp_000050   transient receptor potential cation channel

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Smp_000050 (Schistosoma mansoni), transient receptor potential cation channel
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