Detailed view for Smp_179280

Basic information

TDR Targets ID: 295030
Schistosoma mansoni, hypothetical protein
Source Database / ID:  GeneDB

pI: 10.2923 | Length (AA): 823 | MW (Da): 93213 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00004   ATPase family associated with various cellular activities (AAA)

Gene Ontology

Mouse over links to read term descriptions.
GO:0017111   nucleoside-triphosphatase activity  
GO:0005524   ATP binding  
GO:0000166   nucleotide binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 6 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
250 627 2v1u (A) 13 383 18.00 0 1 0.489495 0.78
261 741 2ce7 (C) 152 604 27.00 0 1 0.680147 0.77
265 752 2dhr (A) 151 600 24.00 0 1 0.737653 0.98
282 551 2x8a (A) 593 838 46.00 0 1 0.596868 0.43
459 530 4a3v (B) 378 448 20.00 0 0.49 0.340685 -0.5
466 530 2dzn (D) 349 412 28.00 0 0.92 0.427179 -0.24

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_128668)

Species Accession Gene Product
Arabidopsis thaliana AT1G05910   cell division cycle protein 48-related protein
Brugia malayi Bm1_28240   ATPase, AAA family protein
Candida albicans CaO19.3949   potential ATPase similar to S. cerevisiae YTA7 (YGR270W)
Candida albicans CaO19.11431   potential ATPase similar to S. cerevisiae YTA7 (YGR270W)
Caenorhabditis elegans CELE_F11A10.1   Protein LEX-1, isoform A
Dictyostelium discoideum DDB_G0281521   AAA ATPase domain-containing protein
Echinococcus granulosus EgrG_000184500   ATPase family AAA domain containing protein 2B
Echinococcus multilocularis EmuJ_000184500   ATPase family AAA domain containing protein 2B
Homo sapiens ENSG00000119778   ATPase family, AAA domain containing 2B
Homo sapiens ENSG00000156802   ATPase family, AAA domain containing 2
Leishmania braziliensis LbrM.11.0710   ATPase, putative
Leishmania donovani LdBPK_110910.1   ATPase, putative
Leishmania infantum LinJ.11.0910   ATPase, putative
Leishmania major LmjF.11.0910   ATPase, putative
Leishmania mexicana LmxM.11.0910   ATPase, putative
Loa Loa (eye worm) LOAG_05966   hypothetical protein
Mus musculus 320817   ATPase family, AAA domain containing 2B
Mus musculus ENSMUSG00000022360   ATPase family, AAA domain containing 2
Oryza sativa 4347572   Os09g0515100
Saccharomyces cerevisiae YGR270W   Yta7p
Schistosoma japonicum Sjp_0122290   ATPase family AAA domain-containing protein 2, putative
Schistosoma mansoni Smp_179280   hypothetical protein
Schmidtea mediterranea mk4.001113.02  
Schmidtea mediterranea mk4.001113.01  
Trypanosoma brucei gambiense Tbg972.11.7170   AAA ATPase, putative
Trypanosoma brucei Tb927.11.6350   AAA ATPase, putative
Trypanosoma congolense TcIL3000.11.6910   AAA ATPase, putative
Trypanosoma congolense TcIL3000_0_14900   AAA ATPase, putative
Trypanosoma cruzi TcCLB.506297.110   ATPase, putative

Essentiality

Smp_179280 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb11.02.4210 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb11.02.4210 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (6 days) alsford
Tb11.02.4210 Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb11.02.4210 Trypanosoma brucei significant gain of fitness in differentiation of procyclic to bloodstream forms alsford
CELE_F11A10.1 Caenorhabditis elegans embryonic lethal wormbase
Show/Hide essentiality data references
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Homo sapiens ATPase family, AAA domain containing 2B Compounds References
Homo sapiens ATPase family, AAA domain containing 2 Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0064 0.4205 0
0.0064 0.4205 0
0.0406 0.401 0.3939
0.0211 0.3588 0.5394
0.0064 0.4205 0
0.0064 0.4205 0
0.126 0.3995 0.5246
0.0942 0.46 0.6118
0.0064 0.4205 0
0.0064 0.4205 0
0.0581 0.7301 0.7301
0.2128 0.511 0.5966
0.0064 0.4205 0
0.0064 0.4205 0
0.0064 0.4205 0
0.0064 0.4205 0
0.1161 0.3782 0.5063
0.0714 0.5252 0.5252
0.0808 0.4741 0
0.034 0.3645 0.3645
0.2128 0.511 0.5966
0.0211 0.3588 0.5394
0.0064 0.4205 0
0.074 0.433 0
0.1035 0.6762 0.6762
0.0563 0.4597 0.6116
0.074 0.433 0
0.0064 0.4205 0
0.2128 0.511 0.5966
0.034 0.3756 0.3737
0.0064 0.4205 0
0.0064 0.4205 0
0.0211 0.3588 0.5394
0.1069 0.7143 0.7143
0.0662 0.3835 0.4818
0.0064 0.4205 0
0.0921 0.7829 0.7829
0.0064 0.4205 0
0.0064 0.4205 0
0.0677 0.4263 0.5527
0.034 0.3756 0.3737
0.0927 0.7045 0.7045
0.0677 0.4263 0.5527
0.0064 0.4205 0
0.0064 0.4205 0
0.0813 0.7716 0.7716
0.0064 0.4205 0
0.0064 0.3724 0
0.0064 0.4205 0
0.0064 0.4205 0
0.0211 0.3588 0.5394
0.0064 0.4205 0
0.0662 0.3835 0.4818
0.0064 0.4205 0
0.0677 0.4263 0.5527
0.0997 0.6801 0.6801
0.0064 0.4205 0
0.0064 0.4205 0
0.0064 0.4205 0
0.0064 0.4205 0
0.0064 0.4205 0
0.0064 0.4205 0
0.0805 0.6462 0.6373
0.0486 0.4994 0.6012
0.0942 0.46 0.6118
0.0064 0.4205 0
0.0064 0.4205 0
0.0285 0.2975 0.2975
0.0064 0.4205 0
0.0684 0.5377 0
0.0989 0.5574 0.693
0.1197 0.3464 0.4633
0.0064 0.4205 0
0.0677 0.4263 0.5527
0.1035 0.6762 0.6762
0.0804 0.4751 0
0.0064 0.4205 0
0.0808 0.6252 0
0.0741 0.4083 0.5551
0.0064 0.4205 0
0.0064 0.4205 0
0.0064 0.4205 0
0.0064 0.4205 0
0.0714 0.5949 0.6538
0.068 0.3731 0.5051
0.0064 0.4205 0
0.0064 0.4205 0
0.0807 0.4771 0
0.0919 0.6611 0.6611
0.126 0.3995 0.5246
0.0064 0.4205 0
0.0064 0.4205 0
0.0064 0.4205 0
0.0064 0.4205 0
0.0128 0.4157 0.4157
0.0406 0.401 0.3939
0.0064 0.4205 0
0.1161 0.3782 0.5063
0.1254 0.5425 0.6366
0.0064 0.4205 0
0.0064 0.4205 0
0.0406 0.401 0.3939

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

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Gene identifier Smp_179280 (Schistosoma mansoni), hypothetical protein
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