Detailed view for TcCLB.508537.10
Basic information
Trypanosoma cruzi, glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative
Source Database / ID: TriTrypDB GeneDB
pI: 8.2629 |
Length (AA): 246 |
MW (Da): 26009 |
Paralog Number:
498
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Network
Pfam domains
Gene Ontology
GO:0051287 NAD binding
GO:0005488 binding
GO:0003824 catalytic activity
GO:0055114 oxidation reduction
GO:0008152 metabolic process
GO:0006006 glucose metabolic process
Metabolic Pathways
Global map (KEGG)
Biosynthesis of secondary metabolites (KEGG)
Biosynthesis of antibiotics (KEGG)
Carbon metabolism (KEGG)
Biosynthesis of amino acids} (KEGG)
Structural information
Modbase 3D models:
There are 3 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
| Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244 | 1gad (O) | 86 | 329 | 80.00 | 0 | 1 | 2.02 | -1.34 |
| 1 | 246 | 1cer (O) | 86 | 331 | 49.00 | 0 | 1 | 1.63 | -0.93 |
| 1 | 246 | 4lsm (A) | 93 | 338 | 96.00 | 0 | 1 | 2.1447 | -0.92 |
Help me make sense of these data.
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
- 4LSM:
-
Resolution Method # Atoms # Residues Dep. Date Pub. Date Mod. Date
Expression
| Upregulation Percent | Ranking | Stage | Dataset |
|---|---|---|---|
| NA% percentile | epimastigote, metacyclic. | Smircich P |
-
Smircich P Ribosome profiling reveals translation control as a key mechanism generating differential gene expression in Trypanosoma cruzi.
Orthologs
Essentiality
Phenotypes and Validation (curated)
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Annotated validation
Associated compounds / Druggability
Druggability index (range: 0 to 1): 0.3
Known modulators for this target
Predicted associations
By orthology with druggable targets
By sequence similarity to non orthologous druggable targets
Obtained from network model
Ranking Plot
Putative Drugs List
Assayability
Assay information
- Assay for Glyceraldehyde-3-Phosphate Dehydrogenase from Bacillus (1.2.1.12 ) Sigma-Aldrich
- Automatic link to known assays based on EC numbers.
Reagent availability
- Reagent:
-
Target Type Source Notes TcCLB.508537.10 cloned gene BRENDA A gene with this EC number or name or sequence has been cloned from Trypanosoma cruzi ( 1 )
Bibliographic References