KEGG   Caenorhabditis elegans (nematode): CELE_F43E2.2
Entry
CELE_F43E2.2      CDS       T00019                                 
Symbol
rpb-4
Name
(RefSeq) RNA polymerase Rpb4/RPC9 core domain-containing protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03020  RNA polymerase
cel03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CELE_F43E2.2 (rpb-4)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CELE_F43E2.2 (rpb-4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cel03021]
    CELE_F43E2.2 (rpb-4)
   03400 DNA repair and recombination proteins [BR:cel03400]
    CELE_F43E2.2 (rpb-4)
Transcription machinery [BR:cel03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     CELE_F43E2.2 (rpb-4)
DNA repair and recombination proteins [BR:cel03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CELE_F43E2.2 (rpb-4)
SSDB
Motif
Pfam: RNA_pol_Rpb4 DUF6377 TetR_C_36
Other DBs
NCBI-GeneID: 174208
NCBI-ProteinID: NP_001370397
WormBase: WBGene00018391
Ensembl: WBGene00018391
LinkDB
Position
II:7374495..7375237
AA seq 144 aa
MSSGGGNQKSDGQVEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSSESKDEIEEM
SEVFIKTLNYARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPS
LENKIEESELEEVLKDLQSKRTFQ
NT seq 435 nt   +upstreamnt  +downstreamnt
atgtcttccggtggaggaaatcaaaagtcagatggacaagtcgaggaagatgccgctgaa
tgcaaatttccgaaagaattcgaaacaacaacatgcgacgctcttctgaccgctgaggtt
tacttgcttctggagcatcgtcgtcaatcgagtgaaagcaaagacgaaattgaagagatg
agcgaggtcttcatcaaaactctcaactacgctcgccgcatgtctcgattcaaaaatcgc
gaaactatccgtgcagttcgagcgattttctccgagaagcatcttcacaaattcgaagtt
gcgcagattgccaatctctgccctgaaaatgccgaagaagccaaagcactagttccttct
ttggaaaacaaaatcgaggagtctgaactagaggaagttctcaaggatctgcaatccaaa
agaacattccaataa

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