KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4343902
Entry
4343902           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9A isoform X1
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4343902
  09124 Replication and repair
   03420 Nucleotide excision repair
    4343902
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4343902
   03400 DNA repair and recombination proteins [BR:osa03400]
    4343902
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     4343902
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4343902
SSDB
Motif
Pfam: RNA_POL_M_15KD TFIIS_C Zn_ribbon_recom Nairovirus_NSm zf-ribbon_3
Other DBs
NCBI-GeneID: 4343902
NCBI-ProteinID: XP_015647354
UniProt: Q7EZ81 Q8GSD5
Position
7:complement(25369214..25371933)
AA seq 116 aa
MAMSALKFCGECSNMLYPREDKETHTLLYACNSCEHQEPATDTCVYKRVLRKPAGEPKDI
LKDAATDPTLPRTRSIKCYNCGHPEAAFFQAPTKGEKGLTLYFICCNPSCGHRWRD
NT seq 351 nt   +upstreamnt  +downstreamnt
atggccatgagcgccctcaagttctgcggcgaatgcagcaacatgctctacccgcgggag
gacaaggagacgcacaccctgctctacgcctgcaattcctgcgagcaccaggagcctgcc
actgacacttgtgtgtacaaaagggttctccgtaaacctgctggggaacccaaagatatc
ctaaaagatgcagcaactgatcccaccctgcctcgcaccagaagtattaaatgttacaac
tgtggccatccagaggctgctttttttcaggctccaactaagggggagaaaggcctgaca
ctgtacttcatctgctgcaacccaagctgtggtcacaggtggagggattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (25)   

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