KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4331295
Entry
4331295           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9B
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4331295
  09124 Replication and repair
   03420 Nucleotide excision repair
    4331295
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4331295
   03400 DNA repair and recombination proteins [BR:osa03400]
    4331295
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     4331295
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4331295
SSDB
Motif
Pfam: TFIIS_C RNA_POL_M_15KD Lep_receptor_Ig CpXC zinc_ribbon_4 DNA_RNApol_7kD
Other DBs
NCBI-GeneID: 4331295
NCBI-ProteinID: XP_015629296
UniProt: Q10T38 A0A8J8YLZ7
Position
3:148135..149026
AA seq 114 aa
MSTMKFCRECNNILYPKEEKDRRLLLFACRNCEHQEVSESKCVYRNEVAHAAGERTQVLQ
DVASDPTLPRTKTVRCAACGHGEAVFFQATARGEEGMTLFFVCCNLTCAHRWRE
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagcaccatgaagttttgccgcgagtgcaacaacatcctgtaccctaaggaggagaag
gaccggcggctgctgctgttcgcgtgccggaactgcgagcaccaggaggtatcggagagc
aagtgcgtgtatcggaacgaggtggcgcacgcggccggggagcggacgcaggtgctgcag
gacgtggcgtcggacccgacactgccgcgcacaaagacggtgaggtgcgccgcctgcggg
cacggcgaggccgtcttcttccaggccaccgcccgcggcgaggagggcatgaccctcttc
ttcgtctgctgcaacctcacctgcgcccaccgatggagggaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (27)   

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