Detailed information for compound 1068950

Basic information

Technical information
  • TDR Targets ID: 1068950
  • Name: (E)-N-[(5-fluoro-3-methyl-1-benzothiophen-2-y l)methyl]-N-methyl-3-(1'-methyl-7-oxospiro[5, 8-dihydro-1,8-naphthyridine-6,4'-piperidine]- 3-yl)prop-2-enamide
  • MW: 492.608 | Formula: C27H29FN4O2S
  • H donors: 1 H acceptors: 3 LogP: 3.61 Rotable bonds: 5
    Rule of 5 violations (Lipinski): 1
  • SMILES: CN1CCC2(CC1)Cc1cc(/C=C/C(=O)N(Cc3sc4c(c3C)cc(cc4)F)C)cnc1NC2=O
  • InChi: 1S/C27H29FN4O2S/c1-17-21-13-20(28)5-6-22(21)35-23(17)16-32(3)24(33)7-4-18-12-19-14-27(8-10-31(2)11-9-27)26(34)30-25(19)29-15-18/h4-7,12-13,15H,8-11,14,16H2,1-3H3,(H,29,30,34)/b7-4+
  • InChiKey: PFDXMBZDTBHXJB-QPJJXVBHSA-N  

Network

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Synonyms

  • (E)-N-[(5-fluoro-3-methyl-benzothiophen-2-yl)methyl]-N-methyl-3-(1'-methyl-7-oxo-spiro[5,8-dihydro-1,8-naphthyridine-6,4'-piperidine]-3-yl)prop-2-enamide
  • (E)-N-[(5-fluoro-3-methyl-2-benzothiophenyl)methyl]-N-methyl-3-(1'-methyl-7-oxo-3-spiro[5,8-dihydro-1,8-naphthyridine-6,4'-piperidine]yl)prop-2-enamide
  • (E)-N-[(5-fluoro-3-methyl-benzothiophen-2-yl)methyl]-3-(7-keto-1'-methyl-spiro[5,8-dihydro-1,8-naphthyridine-6,4'-piperidine]-3-yl)-N-methyl-acrylamide
  • (E)-N-[(5-fluoro-3-methyl-1-benzothiophen-2-yl)methyl]-N-methyl-3-(1'-methyl-7-oxo-spiro[5,8-dihydro-1,8-naphthyridine-6,4'-piperidine]-3-yl)prop-2-enamide

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Staphylococcus aureus Enoyl-[acyl-carrier-protein] reductase [NADPH] References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Toxoplasma gondii enoyl-acyl carrier reductase ENR Get druggable targets OG5_130466 All targets in OG5_130466
Plasmodium berghei enoyl-acyl carrier reductase Get druggable targets OG5_130466 All targets in OG5_130466
Neospora caninum enoyl-acyl carrier reductase, putative Get druggable targets OG5_130466 All targets in OG5_130466
Mycobacterium leprae NADH-DEPENDENT ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE INHA (NADH-DEPENDENT ENOYL-ACP REDUCTASE) Get druggable targets OG5_130466 All targets in OG5_130466
Mycobacterium ulcerans enoyl-(acyl carrier protein) reductase Get druggable targets OG5_130466 All targets in OG5_130466
Plasmodium vivax enoyl-acyl carrier protein reductase Get druggable targets OG5_130466 All targets in OG5_130466
Chlamydia trachomatis enoyl-acyl-carrier protein reductase Get druggable targets OG5_130466 All targets in OG5_130466
Plasmodium falciparum enoyl-acyl carrier reductase Get druggable targets OG5_130466 All targets in OG5_130466
Plasmodium knowlesi enoyl-acyl carrier reductase, putative Get druggable targets OG5_130466 All targets in OG5_130466
Wolbachia endosymbiont of Brugia malayi enoyl-ACP reductase Get druggable targets OG5_130466 All targets in OG5_130466
Trichomonas vaginalis hypothetical protein Get druggable targets OG5_130466 All targets in OG5_130466
Plasmodium yoelii enoyl-acyl carrier reductase Get druggable targets OG5_130466 All targets in OG5_130466
Mycobacterium tuberculosis NADH-dependent enoyl-[acyl-carrier-protein] reductase InhA (NADH-dependent enoyl-ACP reductase) Get druggable targets OG5_130466 All targets in OG5_130466

By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Toxoplasma gondii short chain dehydrogenase family protein, putative Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 250 aa 22.8 %
Schistosoma japonicum ko:K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC1.1.1.125], putative Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 263 aa 24.0 %
Mycobacterium ulcerans carveol-like dehydrogenase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 234 aa 22.6 %
Mycobacterium tuberculosis Probable oxidoreductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 259 aa 25.5 %
Onchocerca volvulus Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 252 aa 27.0 %
Trypanosoma cruzi NAD(P)-dependent oxidoreductase, putative Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 269 aa 21.6 %
Candida albicans similar to bacterial reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 271 aa 25.1 %
Candida albicans putative short-chain alcohol dehydrogenase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 269 aa 21.6 %
Plasmodium yoelii 3-oxoacyl-acyl-carrier protein reductase precursor Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 266 aa 24.8 %
Trypanosoma brucei beta-D-hydroxybutyrate dehydrogenase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 269 aa 21.9 %
Mycobacterium ulcerans short chain dehydrogenase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 262 aa 27.1 %
Schistosoma japonicum ko:K00100 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) [EC:1.1.1.-], putative Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 206 aa 21.8 %
Dictyostelium discoideum hypothetical protein Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 259 aa 22.4 %
Trypanosoma brucei gambiense NAD or NADP dependent oxidoreductase,putative Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 274 aa 23.0 %
Plasmodium berghei 3-oxoacyl-[acyl-carrier-protein] reductase, putative Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 264 aa 24.2 %
Candida albicans similar to Sou1p but not required for sorbose utilization Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 244 aa 23.4 %
Loa Loa (eye worm) dehydrogenase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 238 aa 26.9 %
Candida albicans sorbose utilization/short-chain alcohol dehydrogenase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 261 aa 26.1 %
Candida albicans putative short-chain alcohol dehydrogenase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 269 aa 21.6 %
Schistosoma mansoni 3-oxoacyl-[ACP] reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 270 aa 24.8 %
Mycobacterium tuberculosis Probable 3-oxoacyl-[acyl-carrier protein] reductase FabG4 (3-ketoacyl-acyl carrier protein reductase) Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 255 aa 23.5 %
Echinococcus multilocularis 3 oxoacyl acyl carrier protein reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 259 aa 21.6 %
Drosophila melanogaster CG31549 gene product from transcript CG31549-RA Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 262 aa 27.5 %
Dictyostelium discoideum short-chain dehydrogenase/reductase family protein Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 239 aa 23.9 %
Brugia malayi oxidoreductase, short chain dehydrogenase/reductase family protein Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 267 aa 26.6 %
Mycobacterium ulcerans short-chain type dehydrogenase/reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 265 aa 25.3 %
Candida albicans SPS19-like orf, peroxisomal 2,4-dienoyl-CoA reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 241 aa 24.9 %
Trypanosoma congolense short chain dehydrogenase, putative Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 253 aa 19.8 %
Mycobacterium tuberculosis Possible oxidoreductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 263 aa 25.1 %
Brugia malayi oxidoreductase, short chain dehydrogenase/reductase family protein Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 221 aa 21.7 %
Candida albicans similar to peroxisomal 2,4-dienoyl-CoA reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 238 aa 27.3 %
Trypanosoma congolense pteridine reductase 1 Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 278 aa 23.0 %
Mycobacterium ulcerans short-chain type dehydrogenase/reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 206 aa 21.4 %
Trypanosoma brucei pteridine reductase 1 Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 276 aa 24.3 %
Mycobacterium tuberculosis Probable short-chain type dehydrogenase/reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 260 aa 26.9 %
Mycobacterium ulcerans short chain dehydrogenase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 239 aa 23.4 %
Mycobacterium ulcerans 3-ketoacyl-ACP reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 259 aa 23.6 %
Mycobacterium tuberculosis Probable short-chain type dehydrogenase/reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 252 aa 23.4 %
Dictyostelium discoideum glucose/ribitol dehydrogenase family protein Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 226 aa 22.6 %
Trypanosoma cruzi NAD(P)-dependent oxidoreductase, putative Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 269 aa 21.2 %
Candida albicans sorbose utilization/short-chain alcohol dehydrogenase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 261 aa 26.1 %
Candida albicans similar to SOU1 but not required for sorbose utilization Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 244 aa 23.4 %
Mycobacterium ulcerans short chain dehydrogenase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 256 aa 25.4 %
Candida albicans short-chain alcohol dehydrogenase superfamily Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 271 aa 25.1 %
Mycobacterium ulcerans oxidoreductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 261 aa 28.7 %
Mycobacterium leprae PROBABLE 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE FABG4 (3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE) Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 253 aa 25.3 %
Mycobacterium tuberculosis Probable short-chain type dehydrogenase/reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 206 aa 25.7 %
Mycobacterium tuberculosis Probable short-chain type dehydrogenase/reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 265 aa 27.9 %
Mycobacterium ulcerans 3-ketoacyl-ACP reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 261 aa 27.6 %
Mycobacterium ulcerans short chain dehydrogenase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 254 aa 24.8 %
Candida albicans SPS19-like orf, peroxisomal 2,4-dienoyl-CoA reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 241 aa 24.9 %
Mycobacterium tuberculosis Probable short-chain type dehydrogenase/reductase Enoyl-[acyl-carrier-protein] reductase [NADPH]   256 aa 252 aa 25.4 %

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Schistosoma mansoni hypothetical protein 0.0016 0.0027 0.0274
Loa Loa (eye worm) hypothetical protein 0.0052 0.0764 0.2753
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0046 0.0632 0.6346
Leishmania major telomerase reverse transcriptase, putative 0.0136 0.2503 1
Echinococcus multilocularis muscleblind protein 1 0.0149 0.2776 1
Mycobacterium tuberculosis NADH-dependent enoyl-[acyl-carrier-protein] reductase InhA (NADH-dependent enoyl-ACP reductase) 0.0223 0.4319 1
Loa Loa (eye worm) pigment dispersing factor receptor c 0.0052 0.0764 0.2753
Loa Loa (eye worm) GTP-binding regulatory protein Gs alpha-S chain 0.0046 0.0632 0.2278
Schistosoma mansoni hypothetical protein 0.0016 0.0027 0.0274
Toxoplasma gondii enoyl-acyl carrier reductase ENR 0.0223 0.4319 1
Echinococcus multilocularis diuretic hormone 44 receptor GPRdih2 0.0016 0.0027 0.0098
Mycobacterium ulcerans enoyl-(acyl carrier protein) reductase 0.0223 0.4319 1
Brugia malayi Telomerase reverse transcriptase 0.0362 0.7183 1
Echinococcus multilocularis tar DNA binding protein 0.0063 0.0996 0.359
Trypanosoma cruzi telomerase reverse transcriptase, putative 0.0136 0.2503 1
Echinococcus granulosus GPCR family 2 0.0016 0.0027 0.0098
Brugia malayi RNA binding protein 0.0063 0.0996 0.1387
Loa Loa (eye worm) latrophilin receptor protein 2 0.0016 0.0027 0.0098
Mycobacterium leprae NADH-DEPENDENT ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE INHA (NADH-DEPENDENT ENOYL-ACP REDUCTASE) 0.0223 0.4319 1
Schistosoma mansoni tar DNA-binding protein 0.0063 0.0996 1
Trypanosoma cruzi telomerase reverse transcriptase, putative 0.0136 0.2503 1
Schistosoma mansoni hypothetical protein 0.0036 0.0423 0.4246
Brugia malayi Corticotropin releasing factor receptor 2 precursor, putative 0.0052 0.0764 0.1064
Chlamydia trachomatis enoyl-acyl-carrier protein reductase 0.0223 0.4319 1
Echinococcus granulosus muscleblind protein 0.0149 0.2776 1
Brugia malayi GTP-binding regulatory protein Gs alpha-S chain, putative 0.0046 0.0632 0.088
Brugia malayi Muscleblind-like protein 0.0149 0.2776 0.3864
Loa Loa (eye worm) RNA recognition domain-containing protein domain-containing protein 0.0063 0.0996 0.359
Brugia malayi TAR-binding protein 0.0063 0.0996 0.1387
Loa Loa (eye worm) TAR-binding protein 0.0063 0.0996 0.359
Echinococcus multilocularis cadherin EGF LAG seven pass G type receptor 0.0016 0.0027 0.0098
Trypanosoma brucei telomerase reverse transcriptase 0.0136 0.2503 1
Echinococcus multilocularis GPCR, family 2 0.0016 0.0027 0.0098
Plasmodium falciparum enoyl-acyl carrier reductase 0.0223 0.4319 1
Echinococcus granulosus guanine nucleotide binding protein Gs subunit 0.0046 0.0632 0.2278
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0046 0.0632 0.6346
Plasmodium falciparum telomerase reverse transcriptase 0.0136 0.2503 0.5796
Schistosoma mansoni tar DNA-binding protein 0.0063 0.0996 1
Schistosoma mansoni tar DNA-binding protein 0.0063 0.0996 1
Loa Loa (eye worm) hypothetical protein 0.0149 0.2776 1
Brugia malayi Latrophilin receptor protein 2 0.0016 0.0027 0.0038
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0046 0.0632 0.6346
Brugia malayi calcium-independent alpha-latrotoxin receptor 2, putative 0.0016 0.0027 0.0038
Echinococcus granulosus diuretic hormone 44 receptor GPRdih2 0.0016 0.0027 0.0098
Brugia malayi RNA recognition motif domain containing protein 0.0063 0.0996 0.1387
Schistosoma mansoni tar DNA-binding protein 0.0063 0.0996 1
Plasmodium vivax telomerase reverse transcriptase, putative 0.0136 0.2503 0.5796
Loa Loa (eye worm) hypothetical protein 0.0016 0.0027 0.0098
Plasmodium vivax enoyl-acyl carrier protein reductase 0.0223 0.4319 1
Giardia lamblia Telomerase catalytic subunit 0.0136 0.2503 0.5
Trichomonas vaginalis hypothetical protein 0.0223 0.4319 0.5
Schistosoma mansoni tar DNA-binding protein 0.0063 0.0996 1
Echinococcus multilocularis muscleblind protein 0.0149 0.2776 1
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit 0.0046 0.0632 0.2278
Echinococcus granulosus tar DNA binding protein 0.0063 0.0996 0.359
Echinococcus granulosus cadherin EGF LAG seven pass G type receptor 0.0016 0.0027 0.0098
Loa Loa (eye worm) hypothetical protein 0.0149 0.2776 1
Toxoplasma gondii RNA-directed DNA polymerase 0.0136 0.2503 0.5796
Brugia malayi latrophilin 2 splice variant baaae 0.0036 0.0423 0.0589
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit 0.0046 0.0632 0.2278
Loa Loa (eye worm) hypothetical protein 0.0036 0.0423 0.1524
Schistosoma mansoni hypothetical protein 0.0016 0.0027 0.0274
Echinococcus granulosus guanine nucleotide binding protein Gs subunit 0.0046 0.0632 0.2278
Brugia malayi Calcitonin receptor-like protein seb-1 0.0052 0.0764 0.1064
Wolbachia endosymbiont of Brugia malayi enoyl-ACP reductase 0.0223 0.4319 1
Loa Loa (eye worm) RNA binding protein 0.0063 0.0996 0.359
Schistosoma mansoni hypothetical protein 0.0016 0.0027 0.0274

Activities

Activity type Activity value Assay description Source Reference
IC50 (binding) = 28 nM Inhibition of Staphylococcus aureus FabI ChEMBL. 19682901
MIC (functional) <= 0.063 ug ml-1 Antibacterial activity against Escherichia coli AG100A expressing acrAB gene by microdilution method ChEMBL. 19682901

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
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External resources for this compound

Bibliographic References

No literature references available for this target.

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