Detailed information for compound 134264

Basic information

Technical information
  • TDR Targets ID: 134264
  • Name: (2R)-1-(4-benzylpiperazin-1-yl)-3,3,3-trifluo ro-2-hydroxy-2-methylpropan-1-one
  • MW: 316.319 | Formula: C15H19F3N2O2
  • H donors: 1 H acceptors: 2 LogP: 1.71 Rotable bonds: 5
    Rule of 5 violations (Lipinski): 1
  • SMILES: O=C([C@](C(F)(F)F)(O)C)N1CCN(CC1)Cc1ccccc1
  • InChi: 1S/C15H19F3N2O2/c1-14(22,15(16,17)18)13(21)20-9-7-19(8-10-20)11-12-5-3-2-4-6-12/h2-6,22H,7-11H2,1H3/t14-/m1/s1
  • InChiKey: KWYSLQQFPJNQKB-CQSZACIVSA-N  

Network

Hover on a compound node to display the structore

Synonyms

  • (2R)-1-(4-benzylpiperazin-1-yl)-3,3,3-trifluoro-2-hydroxy-2-methyl-propan-1-one
  • (2R)-1-(4-benzyl-1-piperazinyl)-3,3,3-trifluoro-2-hydroxy-2-methyl-1-propanone
  • (2R)-3,3,3-trifluoro-2-hydroxy-2-methyl-1-[4-(phenylmethyl)piperazin-1-yl]propan-1-one
  • (2R)-1-(4-benzylpiperazino)-3,3,3-trifluoro-2-hydroxy-2-methyl-propan-1-one
  • (2R)-3,3,3-trifluoro-2-hydroxy-2-methyl-1-[4-(phenylmethyl)-1-piperazinyl]propan-1-one
  • (2R)-1-[4-(benzyl)piperazin-1-yl]-3,3,3-trifluoro-2-hydroxy-2-methyl-propan-1-one

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Rattus norvegicus Pyruvate dehydrogenase kinase Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Echinococcus multilocularis Pyruvate dehydrogenase (lipoamide) kinase Get druggable targets OG5_127409 All targets in OG5_127409
Trypanosoma brucei gambiense developmentally regulated phosphoprotein Get druggable targets OG5_127409 All targets in OG5_127409
Schistosoma japonicum ko:K00898 pyruvate dehydrogenase kinase [EC2.7.11.2], putative Get druggable targets OG5_127409 All targets in OG5_127409
Trypanosoma cruzi developmentally regulated phosphoprotein, putative Get druggable targets OG5_127409 All targets in OG5_127409
Loa Loa (eye worm) hypothetical protein Get druggable targets OG5_127409 All targets in OG5_127409
Leishmania donovani developmentally regulated phosphoprotein-like protein Get druggable targets OG5_127409 All targets in OG5_127409
Schistosoma mansoni pyruvate dehydrogenase Get druggable targets OG5_127409 All targets in OG5_127409
Candida albicans similar to S. pombe SPAC644.11c predicted pyruvate dehydrogenase kinase Get druggable targets OG5_127409 All targets in OG5_127409
Leishmania braziliensis developmentally regulated phosphoprotein-like protein Get druggable targets OG5_127409 All targets in OG5_127409
Leishmania mexicana developmentally regulated phosphoprotein-like protein Get druggable targets OG5_127409 All targets in OG5_127409
Echinococcus multilocularis Pyruvate dehydrogenase (lipoamide) kinase Get druggable targets OG5_127409 All targets in OG5_127409
Leishmania infantum developmentally regulated phosphoprotein-like protein Get druggable targets OG5_127409 All targets in OG5_127409
Schistosoma mansoni pyruvate dehydrogenase Get druggable targets OG5_127409 All targets in OG5_127409
Schistosoma japonicum [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial precursor, putative Get druggable targets OG5_127409 All targets in OG5_127409
Schistosoma mansoni pyruvate dehydrogenase Get druggable targets OG5_127409 All targets in OG5_127409
Trypanosoma brucei developmentally regulated phosphoprotein Get druggable targets OG5_127409 All targets in OG5_127409
Brugia malayi kinase, mitochondrial precursor Get druggable targets OG5_127409 All targets in OG5_127409
Leishmania major developmentally regulated phosphoprotein-like protein Get druggable targets OG5_127409 All targets in OG5_127409
Echinococcus granulosus Pyruvate dehydrogenase lipoamide kinase Get druggable targets OG5_127409 All targets in OG5_127409
Trypanosoma congolense developmentally regulated phosphoprotein, putative Get druggable targets OG5_127409 All targets in OG5_127409

By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Leishmania mexicana pyruvate dehydrogenase (lipoamide) kinase, putative Pyruvate dehydrogenase kinase   407 aa 373 aa 22.5 %
Leishmania donovani pyruvate dehydrogenase (lipoamide) kinase, putative Pyruvate dehydrogenase kinase   407 aa 373 aa 23.3 %
Leishmania infantum pyruvate dehydrogenase (lipoamide) kinase, putative Pyruvate dehydrogenase kinase   407 aa 373 aa 23.3 %
Trypanosoma brucei gambiense pyruvate dehydrogenase (lipoamide) kinase, putative Pyruvate dehydrogenase kinase   407 aa 348 aa 22.4 %
Leishmania major pyruvate dehydrogenase (lipoamide) kinase, putative Pyruvate dehydrogenase kinase   407 aa 373 aa 23.1 %
Trypanosoma cruzi pyruvate dehydrogenase (lipoamide) kinase, putative Pyruvate dehydrogenase kinase   407 aa 337 aa 22.3 %
Trypanosoma congolense pyruvate dehydrogenase (lipoamide) kinase, putative Pyruvate dehydrogenase kinase   407 aa 339 aa 22.7 %
Trypanosoma brucei pyruvate dehydrogenase (lipoamide) kinase, putative Pyruvate dehydrogenase kinase   407 aa 348 aa 22.4 %
Leishmania braziliensis pyruvate dehydrogenase (lipoamide) kinase, putative Pyruvate dehydrogenase kinase   407 aa 373 aa 22.3 %
Neospora caninum 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) kinase, putative Pyruvate dehydrogenase kinase   407 aa 377 aa 28.1 %
Toxoplasma gondii ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein Pyruvate dehydrogenase kinase   407 aa 374 aa 28.3 %

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Mycobacterium ulcerans esterase/lipase LipP 0.0078 0.0802 1
Loa Loa (eye worm) PHD-finger family protein 0.0024 0.0048 0.0054
Loa Loa (eye worm) beta-lactamase 0.0078 0.0802 0.0907
Brugia malayi MH1 domain containing protein 0.0045 0.0336 0.0316
Brugia malayi beta-lactamase family protein 0.0078 0.0802 0.0847
Trypanosoma brucei cysteine peptidase, Clan CA, family C1, Cathepsin L-like 0.0068 0.0664 0.1909
Leishmania major cathepsin L-like protease 0.0068 0.0664 0.1909
Loa Loa (eye worm) hypothetical protein 0.0107 0.1205 0.1363
Mycobacterium tuberculosis Probable hydrolase 0.0078 0.0802 0.0356
Echinococcus multilocularis TGF beta signal transducer SmadC 0.0045 0.0336 0.0306
Brugia malayi intermediate filament protein 0.0055 0.0484 0.0486
Brugia malayi beta-lactamase 0.0078 0.0802 0.0847
Trichomonas vaginalis penicillin-binding protein, putative 0.0078 0.0802 0.5
Loa Loa (eye worm) nuclear factor I 0.0025 0.0058 0.0065
Echinococcus multilocularis bromodomain adjacent to zinc finger domain 0.0069 0.0682 0.0653
Leishmania major aldehyde dehydrogenase, mitochondrial precursor 0.0062 0.0586 0.1306
Loa Loa (eye worm) hypothetical protein 0.0027 0.0085 0.0097
Echinococcus multilocularis mothers against decapentaplegic 5 0.0045 0.0336 0.0306
Echinococcus multilocularis smad 0.0045 0.0336 0.0306
Trypanosoma brucei cysteine peptidase, Clan CA, family C1, Cathepsin L-like 0.0068 0.0664 0.1909
Mycobacterium tuberculosis Conserved protein 0.0078 0.0802 0.0356
Brugia malayi Intermediate filament tail domain containing protein 0.0055 0.0484 0.0486
Trypanosoma brucei cysteine peptidase, Clan CA, family C1, Cathepsin L-like 0.0068 0.0664 0.1909
Echinococcus granulosus TGF beta signal transducer SmadC 0.0045 0.0336 0.0306
Mycobacterium tuberculosis Probable lipase LipD 0.0078 0.0802 0.0356
Mycobacterium tuberculosis Possible penicillin-binding protein 0.0498 0.6669 1
Trypanosoma brucei cysteine peptidase, Clan CA, family C1, Cathepsin L-like 0.0068 0.0664 0.1909
Trypanosoma brucei developmentally regulated phosphoprotein 0.0144 0.1721 1
Schistosoma mansoni smad 0.0045 0.0336 0.0306
Brugia malayi MH1 domain containing protein 0.0045 0.0336 0.0316
Echinococcus granulosus lamin dm0 0.0055 0.0484 0.0455
Echinococcus granulosus tumor protein p63 0.073 0.9905 0.9905
Onchocerca volvulus 0.0078 0.0802 0.4409
Loa Loa (eye worm) RNA recognition domain-containing protein domain-containing protein 0.0256 0.3284 0.3714
Trypanosoma brucei cysteine peptidase, Clan CA, family C1, Cathepsin L-like 0.0068 0.0664 0.1909
Leishmania major cathepsin L-like protease 0.0068 0.0664 0.1909
Trichomonas vaginalis D-aminoacylase, putative 0.0078 0.0802 0.5
Mycobacterium tuberculosis Conserved protein 0.0078 0.0802 0.0356
Trypanosoma brucei hypothetical protein, conserved 0.0078 0.0802 0.2964
Mycobacterium tuberculosis Probable conserved lipoprotein 0.0078 0.0802 0.0356
Trypanosoma cruzi cysteine peptidase, putative 0.0068 0.0664 0.1909
Mycobacterium tuberculosis Probable esterase LipL 0.0078 0.0802 0.0356
Plasmodium vivax hypothetical protein, conserved 0.0078 0.0802 0.5
Brugia malayi RNA binding protein 0.0256 0.3284 0.3673
Toxoplasma gondii ABC1 family protein 0.0078 0.0802 1
Loa Loa (eye worm) hypothetical protein 0.0078 0.0802 0.0907
Echinococcus multilocularis beta LACTamase domain containing family member 0.0078 0.0802 0.0774
Mycobacterium leprae Probable lipase LipE 0.0078 0.0802 0.5
Loa Loa (eye worm) MH2 domain-containing protein 0.0045 0.0336 0.0379
Schistosoma mansoni tar DNA-binding protein 0.0256 0.3284 0.3264
Brugia malayi Smad1 0.0045 0.0336 0.0316
Loa Loa (eye worm) intermediate filament tail domain-containing protein 0.0055 0.0484 0.0548
Brugia malayi beta-lactamase family protein 0.0078 0.0802 0.0847
Schistosoma mansoni pyruvate dehydrogenase 0.0144 0.1721 0.1695
Trypanosoma cruzi cruzipain precursor, putative 0.0068 0.0664 0.1909
Onchocerca volvulus 0.0078 0.0802 0.4409
Echinococcus multilocularis musashi 0.0055 0.0484 0.0455
Loa Loa (eye worm) beta-LACTamase domain containing family member 0.0078 0.0802 0.0907
Brugia malayi MH2 domain containing protein 0.0045 0.0336 0.0316
Echinococcus granulosus Pyruvate dehydrogenase lipoamide kinase 0.0144 0.1721 0.1695
Brugia malayi kinase, mitochondrial precursor 0.0144 0.1721 0.1893
Schistosoma mansoni acetyl-CoA C-acetyltransferase 0.0026 0.0079 0.0048
Trypanosoma brucei cysteine peptidase, Clan CA, family C1, Cathepsin L-like 0.0068 0.0664 0.1909
Mycobacterium tuberculosis Probable esterase/lipase LipP 0.0078 0.0802 0.0356
Schistosoma mansoni tar DNA-binding protein 0.0256 0.3284 0.3264
Echinococcus granulosus fetal alzheimer antigen falz 0.0026 0.0079 0.0048
Echinococcus multilocularis tar DNA binding protein 0.0256 0.3284 0.3264
Trypanosoma cruzi cysteine peptidase, putative 0.0068 0.0664 0.1909
Echinococcus granulosus smad 0.0045 0.0336 0.0306
Schistosoma mansoni Smad4 0.0045 0.0336 0.0306
Schistosoma mansoni family S12 unassigned peptidase (S12 family) 0.0078 0.0802 0.0774
Onchocerca volvulus 0.0078 0.0802 0.4409
Echinococcus granulosus Smad4 0.0045 0.0336 0.0306
Loa Loa (eye worm) MH1 domain-containing protein 0.0045 0.0336 0.0379
Trichomonas vaginalis penicillin-binding protein, putative 0.0078 0.0802 0.5
Leishmania major cathepsin L-like protease 0.0068 0.0664 0.1909
Echinococcus multilocularis cytoplasmic intermediate filament protein 0.0027 0.0085 0.0055
Mycobacterium ulcerans fusion of enoyl-CoA hydratase, EchA21 and lipase, LipE 0.0078 0.0802 1
Schistosoma mansoni microtubule-associated protein tau 0.0736 1 1
Loa Loa (eye worm) MH2 domain-containing protein 0.0654 0.8844 1
Loa Loa (eye worm) TAR-binding protein 0.0256 0.3284 0.3714
Loa Loa (eye worm) hypothetical protein 0.0078 0.0802 0.0907
Loa Loa (eye worm) RNA binding protein 0.0256 0.3284 0.3714
Loa Loa (eye worm) hypothetical protein 0.0082 0.0861 0.0973
Echinococcus multilocularis lamin dm0 0.0055 0.0484 0.0455
Echinococcus multilocularis microtubule associated protein 2 0.0736 1 1
Echinococcus granulosus lamin 0.0055 0.0484 0.0455
Echinococcus granulosus mothers against decapentaplegic 5 0.0045 0.0336 0.0306
Schistosoma mansoni aldehyde dehydrogenase 0.0062 0.0586 0.0556
Trypanosoma cruzi cysteine peptidase, clan CA, family C1, cathepsin L-like, putative 0.0062 0.0582 0.1277
Loa Loa (eye worm) hypothetical protein 0.0078 0.0802 0.0907
Echinococcus multilocularis lamin 0.0055 0.0484 0.0455
Loa Loa (eye worm) hypothetical protein 0.0047 0.0374 0.0423
Schistosoma mansoni tar DNA-binding protein 0.0256 0.3284 0.3264
Schistosoma mansoni aldehyde dehydrogenase 0.0062 0.0586 0.0556
Loa Loa (eye worm) hypothetical protein 0.0055 0.0484 0.0548
Echinococcus granulosus beta LACTamase domain containing family member 0.0078 0.0802 0.0774
Echinococcus multilocularis bromodomain adjacent to zinc finger domain 0.0042 0.0296 0.0266
Loa Loa (eye worm) hypothetical protein 0.005 0.0405 0.0458
Schistosoma mansoni pyruvate dehydrogenase 0.0136 0.1609 0.1583
Trichomonas vaginalis D-aminoacylase, putative 0.0078 0.0802 0.5
Trypanosoma cruzi hypothetical protein, conserved 0.0078 0.0802 0.2964
Trichomonas vaginalis D-aminoacylase, putative 0.0078 0.0802 0.5
Schistosoma mansoni smad1 5 8 and 0.0045 0.0336 0.0306
Echinococcus multilocularis Smad4 0.0045 0.0336 0.0306
Schistosoma mansoni TGF-beta signal transducer Smad2 0.0045 0.0336 0.0306
Schistosoma mansoni smad1 5 8 and 0.0045 0.0336 0.0306
Loa Loa (eye worm) hypothetical protein 0.0025 0.0058 0.0065
Loa Loa (eye worm) intermediate filament protein 0.0055 0.0484 0.0548
Echinococcus granulosus aldehyde dehydrogenase mitochondrial 0.0062 0.0586 0.0556
Schistosoma mansoni cellular tumor antigen P53 0.0107 0.1205 0.1178
Toxoplasma gondii ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein 0.0058 0.0527 0.2885
Trypanosoma brucei cysteine peptidase, Clan CA, family C1, Cathepsin L-like 0.0068 0.0664 0.1909
Loa Loa (eye worm) hypothetical protein 0.0144 0.1721 0.1946
Echinococcus granulosus bromodomain adjacent to zinc finger domain 0.0069 0.0682 0.0653
Brugia malayi Hypothetical 52.5 kDa protein ZK945.1 in chromosome II, putative 0.0078 0.0802 0.0847
Echinococcus multilocularis fetal alzheimer antigen, falz 0.0026 0.0079 0.0048
Brugia malayi Bromodomain containing protein 0.0044 0.0335 0.0315
Mycobacterium leprae conserved hypothetical protein 0.0078 0.0802 0.5
Echinococcus multilocularis tumor protein p63 0.073 0.9905 0.9905
Trypanosoma cruzi major cysteine proteinase, putative 0.0054 0.0461 0.035
Schistosoma mansoni hypothetical protein 0.0024 0.0048 0.0017
Trypanosoma cruzi hypothetical protein, conserved 0.0078 0.0802 0.2964
Loa Loa (eye worm) hypothetical protein 0.0078 0.0802 0.0907
Trypanosoma brucei cysteine peptidase, Clan CA, family C1, Cathepsin L-like 0.0068 0.0664 0.1909
Trypanosoma cruzi cysteine peptidase, putative 0.0068 0.0664 0.1909
Echinococcus granulosus cytoplasmic intermediate filament protein 0.0027 0.0085 0.0055
Loa Loa (eye worm) hypothetical protein 0.0026 0.0071 0.0081
Schistosoma mansoni tar DNA-binding protein 0.0256 0.3284 0.3264
Loa Loa (eye worm) hypothetical protein 0.0078 0.0802 0.0907
Leishmania major developmentally regulated phosphoprotein-like protein 0.0144 0.1721 1
Schistosoma mansoni lamin 0.0055 0.0484 0.0455
Schistosoma mansoni intermediate filament proteins 0.0055 0.0484 0.0455
Brugia malayi MH2 domain containing protein 0.0045 0.0336 0.0316
Loa Loa (eye worm) hypothetical protein 0.0054 0.047 0.0532
Mycobacterium ulcerans beta-lactamase 0.0078 0.0802 1
Schistosoma mansoni lamin 0.0055 0.0484 0.0455
Mycobacterium tuberculosis Conserved protein 0.0078 0.0802 0.0356
Mycobacterium ulcerans hypothetical protein 0.0078 0.0802 1
Trichomonas vaginalis esterase, putative 0.0078 0.0802 0.5
Mycobacterium tuberculosis Possible conserved lipoprotein LpqK 0.0078 0.0802 0.0356
Brugia malayi TAR-binding protein 0.0256 0.3284 0.3673
Onchocerca volvulus 0.0107 0.1205 1
Loa Loa (eye worm) cytoplasmic intermediate filament protein 0.003 0.0126 0.0143
Echinococcus granulosus intermediate filament protein 0.0055 0.0484 0.0455
Schistosoma mansoni family S12 unassigned peptidase (S12 family) 0.0078 0.0802 0.0774
Schistosoma mansoni tar DNA-binding protein 0.0256 0.3284 0.3264
Brugia malayi MH2 domain containing protein 0.0654 0.8844 1
Brugia malayi Bromodomain containing protein 0.0087 0.093 0.0993
Toxoplasma gondii aldehyde dehydrogenase 0.0062 0.0586 0.4405
Schistosoma mansoni pyruvate dehydrogenase 0.0136 0.1609 0.1583
Loa Loa (eye worm) hypothetical protein 0.0045 0.0336 0.038
Brugia malayi PHD-finger family protein 0.0029 0.0118 0.0068
Loa Loa (eye worm) hypothetical protein 0.0026 0.0071 0.0081
Echinococcus multilocularis aldehyde dehydrogenase, mitochondrial 0.0062 0.0586 0.0556
Trypanosoma brucei cysteine peptidase, Clan CA, family C1, Cathepsin L-like 0.0068 0.0664 0.1909
Trypanosoma brucei cysteine peptidase, Clan CA, family C1, Cathepsin L-like 0.0068 0.0664 0.1909
Loa Loa (eye worm) Smad1 0.0045 0.0336 0.0379
Leishmania major hypothetical protein, conserved 0.0078 0.0802 0.2964
Schistosoma mansoni bromodomain containing protein 0.0073 0.074 0.0711
Loa Loa (eye worm) transcription factor SMAD2 0.0654 0.8844 1
Mycobacterium ulcerans lipase LipD 0.0078 0.0802 1
Loa Loa (eye worm) hypothetical protein 0.0078 0.0802 0.0907
Schistosoma mansoni smad1 5 8 and 0.0045 0.0336 0.0306
Echinococcus granulosus tar DNA binding protein 0.0256 0.3284 0.3264
Mycobacterium tuberculosis Probable lipase LipE 0.0078 0.0802 0.0356
Brugia malayi cytoplasmic intermediate filament protein 0.003 0.0126 0.0078
Trypanosoma brucei cysteine peptidase, Clan CA, family C1, Cathepsin L-like 0.0068 0.0664 0.1909
Brugia malayi RNA recognition motif domain containing protein 0.0256 0.3284 0.3673
Echinococcus multilocularis Pyruvate dehydrogenase (lipoamide) kinase 0.0144 0.1721 0.1695
Echinococcus multilocularis Pyruvate dehydrogenase (lipoamide) kinase 0.0144 0.1721 0.1695
Echinococcus granulosus bromodomain adjacent to zinc finger domain 0.0042 0.0296 0.0266
Trypanosoma cruzi developmentally regulated phosphoprotein, putative 0.0144 0.1721 1

Activities

Activity type Activity value Assay description Source Reference
IC50 (binding) = 19.9 uM Inhibitory activity tested against Pyruvate Dehydrogenase Kinase (PDHK) receptor from rats. ChEMBL. 10649979
IC50 (binding) = 19.9 uM Inhibitory activity tested against Pyruvate Dehydrogenase Kinase (PDHK) receptor from rats. ChEMBL. 10649979

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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