Detailed information for compound 1484501

Basic information

Technical information
  • TDR Targets ID: 1484501
  • Name: [2-[(2-methoxy-4-nitrophenyl)amino]-2-oxoethy l] 2,4-dioxo-1H-pyrimidine-5-carboxylate
  • MW: 364.267 | Formula: C14H12N4O8
  • H donors: 3 H acceptors: 8 LogP: 1.27 Rotable bonds: 8
    Rule of 5 violations (Lipinski): 1
  • SMILES: COc1cc(ccc1NC(=O)COC(=O)c1cnc(nc1O)O)[N+](=O)[O-]
  • InChi: 1S/C14H12N4O8/c1-25-10-4-7(18(23)24)2-3-9(10)16-11(19)6-26-13(21)8-5-15-14(22)17-12(8)20/h2-5H,6H2,1H3,(H,16,19)(H2,15,17,20,22)
  • InChiKey: MBSDEPRBGCAKCM-UHFFFAOYSA-N  


Substructure search Similarity search

Network

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Synonyms

  • [2-[(2-methoxy-4-nitro-phenyl)amino]-2-oxo-ethyl] 2,4-dioxo-1H-pyrimidine-5-carboxylate
  • 2,4-dioxo-1H-pyrimidine-5-carboxylic acid [2-[(2-methoxy-4-nitrophenyl)amino]-2-oxoethyl] ester
  • 2,4-diketo-1H-pyrimidine-5-carboxylic acid [2-keto-2-[(2-methoxy-4-nitro-phenyl)amino]ethyl] ester
  • Oprea1_302731
  • T5234965

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Homo sapiens TAR DNA binding protein Starlite/ChEMBL No references
Homo sapiens polymerase (DNA directed), eta Starlite/ChEMBL No references
Homo sapiens ataxin 2 Starlite/ChEMBL No references

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Schistosoma mansoni DNA polymerase eta Get druggable targets OG5_128521 All targets in OG5_128521
Leishmania major DNA polymerase eta, putative Get druggable targets OG5_128521 All targets in OG5_128521
Leishmania infantum DNA polymerase eta, putative Get druggable targets OG5_128521 All targets in OG5_128521
Schistosoma mansoni tar DNA-binding protein Get druggable targets OG5_132461 All targets in OG5_132461
Echinococcus granulosus dna polymerase eta Get druggable targets OG5_128521 All targets in OG5_128521
Schistosoma mansoni tar DNA-binding protein Get druggable targets OG5_132461 All targets in OG5_132461
Brugia malayi RNA recognition motif domain containing protein Get druggable targets OG5_132461 All targets in OG5_132461
Candida albicans similar to S. cerevisiae DNA polymerase pol-eta, involved in the bypass of distorted DNA lesions Get druggable targets OG5_128521 All targets in OG5_128521
Echinococcus multilocularis tar DNA binding protein Get druggable targets OG5_132461 All targets in OG5_132461
Brugia malayi TAR-binding protein Get druggable targets OG5_132461 All targets in OG5_132461
Leishmania infantum DNA polymerase eta, putative Get druggable targets OG5_128521 All targets in OG5_128521
Echinococcus multilocularis dna polymerase eta Get druggable targets OG5_128521 All targets in OG5_128521
Schistosoma japonicum ko:K03509 DNA polymerase eta subunit, putative Get druggable targets OG5_128521 All targets in OG5_128521
Schistosoma japonicum TAR DNA-binding protein 43, putative Get druggable targets OG5_132461 All targets in OG5_132461
Cryptosporidium parvum DinB/family X-type DNA polymerase Get druggable targets OG5_128521 All targets in OG5_128521
Loa Loa (eye worm) RNA recognition domain-containing protein domain-containing protein Get druggable targets OG5_132461 All targets in OG5_132461
Schistosoma japonicum ko:K03509 DNA polymerase eta subunit, putative Get druggable targets OG5_128521 All targets in OG5_128521
Loa Loa (eye worm) RNA binding protein Get druggable targets OG5_132461 All targets in OG5_132461
Brugia malayi RNA binding protein Get druggable targets OG5_132461 All targets in OG5_132461
Echinococcus granulosus tar DNA binding protein Get druggable targets OG5_132461 All targets in OG5_132461
Trypanosoma brucei gambiense DNA polymerase eta, putative Get druggable targets OG5_128521 All targets in OG5_128521
Leishmania mexicana DNA polymerase eta, putative Get druggable targets OG5_128521 All targets in OG5_128521
Brugia malayi ImpB/MucB/SamB family protein Get druggable targets OG5_128521 All targets in OG5_128521
Trypanosoma congolense DNA polymerase eta, putative Get druggable targets OG5_128521 All targets in OG5_128521
Leishmania major DNA polymerase eta, putative Get druggable targets OG5_128521 All targets in OG5_128521
Toxoplasma gondii ImpB/MucB/SamB family protein Get druggable targets OG5_128521 All targets in OG5_128521
Leishmania braziliensis DNA polymerase eta, putative Get druggable targets OG5_128521 All targets in OG5_128521
Loa Loa (eye worm) hypothetical protein Get druggable targets OG5_128521 All targets in OG5_128521
Trypanosoma cruzi DNA polymerase eta, putative Get druggable targets OG5_128521 All targets in OG5_128521
Schistosoma mansoni tar DNA-binding protein Get druggable targets OG5_132461 All targets in OG5_132461
Loa Loa (eye worm) TAR-binding protein Get druggable targets OG5_132461 All targets in OG5_132461
Neospora caninum Pc21g17280 protein, related Get druggable targets OG5_128521 All targets in OG5_128521
Schistosoma japonicum TAR DNA-binding protein 43, putative Get druggable targets OG5_132461 All targets in OG5_132461
Trypanosoma cruzi DNA polymerase eta, putative Get druggable targets OG5_128521 All targets in OG5_128521
Schistosoma mansoni tar DNA-binding protein Get druggable targets OG5_132461 All targets in OG5_132461
Schistosoma mansoni tar DNA-binding protein Get druggable targets OG5_132461 All targets in OG5_132461
Leishmania braziliensis DNA polymerase eta, putative Get druggable targets OG5_128521 All targets in OG5_128521
Trypanosoma brucei DNA polymerase eta, putative Get druggable targets OG5_128521 All targets in OG5_128521
Candida albicans similar to S. cerevisiae DNA polymerase pol-eta, involved in the bypass of distorted DNA lesions Get druggable targets OG5_128521 All targets in OG5_128521
Leishmania mexicana Get druggable targets OG5_128521 All targets in OG5_128521
By sequence similarity to non orthologous known druggable targets
No druggable targets predicted by sequence similarity
Obtained from network model

Ranking Plot

Putative Targets List

Species Potential target Raw Global Species
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0149 1 1
Loa Loa (eye worm) RNA binding protein 0.0076 0.4071 0.4071
Trypanosoma cruzi PAB1-binding protein , putative 0.003 0.0319 0.142
Loa Loa (eye worm) hypothetical protein 0.0149 1 1
Schistosoma mansoni tar DNA-binding protein 0.0076 0.4071 0.4071
Onchocerca volvulus 0.0133 0.8644 0.8644
Schistosoma mansoni DNA polymerase eta 0.0054 0.2243 0.2243
Leishmania major DNA polymerase eta, putative 0.0054 0.2243 1
Echinococcus granulosus tar DNA binding protein 0.0076 0.4071 1
Echinococcus multilocularis dna polymerase eta 0.0054 0.2243 0.5511
Trypanosoma cruzi DNA polymerase eta, putative 0.0038 0.0934 0.4164
Schistosoma mansoni tar DNA-binding protein 0.0076 0.4071 0.4071
Loa Loa (eye worm) hypothetical protein 0.0054 0.2243 0.2243
Brugia malayi RNA recognition motif domain containing protein 0.0076 0.4071 0.4071
Plasmodium vivax ataxin-2 like protein, putative 0.003 0.0319 1
Toxoplasma gondii ImpB/MucB/SamB family protein 0.0038 0.0934 1
Schistosoma mansoni tar DNA-binding protein 0.0076 0.4071 0.4071
Echinococcus multilocularis tar DNA binding protein 0.0076 0.4071 1
Leishmania major DNA polymerase eta, putative 0.0038 0.0934 0.4164
Plasmodium falciparum ataxin-2 like protein, putative 0.003 0.0319 1
Loa Loa (eye worm) hypothetical protein 0.003 0.0319 0.0319
Leishmania major hypothetical protein, conserved 0.003 0.0319 0.142
Loa Loa (eye worm) TAR-binding protein 0.0076 0.4071 0.4071
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0149 1 1
Plasmodium falciparum ataxin-2 like protein, putative 0.003 0.0319 1
Brugia malayi RNA binding protein 0.0076 0.4071 0.4071
Echinococcus granulosus dna polymerase eta 0.0054 0.2243 0.5511
Trypanosoma cruzi DNA polymerase eta, putative 0.0054 0.2243 1
Trypanosoma brucei DNA polymerase eta, putative 0.0054 0.2243 1
Onchocerca volvulus 0.0149 1 1
Toxoplasma gondii LsmAD domain-containing protein 0.003 0.0319 0.3411
Loa Loa (eye worm) hypothetical protein 0.0149 1 1
Schistosoma mansoni tar DNA-binding protein 0.0076 0.4071 0.4071
Brugia malayi hypothetical protein 0.003 0.0319 0.0319
Brugia malayi TAR-binding protein 0.0076 0.4071 0.4071
Brugia malayi ImpB/MucB/SamB family protein 0.0054 0.2243 0.2243
Schistosoma mansoni tar DNA-binding protein 0.0076 0.4071 0.4071
Trypanosoma cruzi PAB1-binding protein , putative 0.003 0.0319 0.142
Loa Loa (eye worm) RNA recognition domain-containing protein domain-containing protein 0.0076 0.4071 0.4071

Activities

Activity type Activity value Assay description Source Reference
Potency (functional) 0.3981 uM PubChem BioAssay. qHTS for Inhibitors of ATXN expression. (Class of assay: confirmatory) ChEMBL. No reference
Potency (functional) 3.5481 uM PUBCHEM_BIOASSAY: qHTS for Inhibitors of Polymerase Eta. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID588636] ChEMBL. No reference
Potency (functional) 6.3096 uM PubChem BioAssay. qHTS of TDP-43 Inhibitors. (Class of assay: confirmatory) ChEMBL. No reference
Potency (functional) 23.0999 uM PUBCHEM_BIOASSAY: qHTS screen for small molecules that inhibit ELG1-dependent DNA repair in human embryonic kidney (HEK293T) cells expressing luciferase-tagged ELG1. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID493107, AID493125] ChEMBL. No reference
Potency (functional) 100 uM PUBCHEM_BIOASSAY: qHTS for Inhibitors of Polymerase Iota. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID588623] ChEMBL. No reference

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

No literature references available for this target.

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