Detailed information for compound 221286

Basic information

Technical information
  • TDR Targets ID: 221286
  • Name: (2R,4R)-1-[(2S)-4-[[(3S)-1-carbamimidoylpiper idin-3-yl]methylamino]-2-(naphthalen-2-ylsulf onylamino)-4-oxobutanoyl]-4-methylpiperidine- 2-carboxylic acid
  • MW: 586.703 | Formula: C28H38N6O6S
  • H donors: 4 H acceptors: 6 LogP: 1.62 Rotable bonds: 12
    Rule of 5 violations (Lipinski): 2
  • SMILES: C[C@@H]1CCN([C@H](C1)C(=O)O)C(=O)[C@@H](NS(=O)(=O)c1ccc2c(c1)cccc2)CC(=O)NC[C@@H]1CCCN(C1)C(=N)N
  • InChi: 1S/C28H38N6O6S/c1-18-10-12-34(24(13-18)27(37)38)26(36)23(15-25(35)31-16-19-5-4-11-33(17-19)28(29)30)32-41(39,40)22-9-8-20-6-2-3-7-21(20)14-22/h2-3,6-9,14,18-19,23-24,32H,4-5,10-13,15-17H2,1H3,(H3,29,30)(H,31,35)(H,37,38)/t18-,19+,23+,24-/m1/s1
  • InChiKey: BPPNPBQJRWCUDE-RJADORODSA-N  


Substructure search Similarity search

Network

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Synonyms

  • (2R,4R)-1-[(2S)-4-[[(3S)-1-carbamimidoyl-3-piperidyl]methylamino]-2-(2-naphthylsulfonylamino)-4-oxo-butanoyl]-4-methyl-piperidine-2-carboxylic acid
  • (2R,4R)-1-[(2S)-4-[[(3S)-1-carbamimidoyl-3-piperidinyl]methylamino]-2-(2-naphthalenylsulfonylamino)-1,4-dioxobutyl]-4-methyl-2-piperidinecarboxylic acid
  • (2R,4R)-1-[(2S)-4-[[(3S)-1-carbamimidoylpiperidin-3-yl]methylamino]-2-(naphthalen-2-ylsulfonylamino)-4-oxo-butanoyl]-4-methyl-piperidine-2-carboxylic acid
  • (2R,4R)-1-[(2S)-4-[[(3S)-1-amidino-3-piperidyl]methylamino]-4-keto-2-(2-naphthylsulfonylamino)butanoyl]-4-methyl-pipecolinic acid
  • (2R,4R)-1-[(2S)-4-[[(3S)-1-carbamimidoyl-3-piperidinyl]methylamino]-2-(2-naphthylsulfonylamino)-1,4-dioxobutyl]-4-methyl-2-piperidinecarboxylic acid

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Homo sapiens coagulation factor II (thrombin) Starlite/ChEMBL References
Bos taurus Trypsin I Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) Get druggable targets OG5_126639 All targets in OG5_126639
Onchocerca volvulus Get druggable targets OG5_126639 All targets in OG5_126639
Schistosoma japonicum ko:K09639 transmembrane protease, serine 8, putative Get druggable targets OG5_126639 All targets in OG5_126639
Loa Loa (eye worm) hypothetical protein Get druggable targets OG5_126639 All targets in OG5_126639
Brugia malayi Trypsin family protein Get druggable targets OG5_126639 All targets in OG5_126639
Loa Loa (eye worm) hypothetical protein Get druggable targets OG5_126639 All targets in OG5_126639
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) Get druggable targets OG5_126639 All targets in OG5_126639
Onchocerca volvulus Get druggable targets OG5_126639 All targets in OG5_126639
Schistosoma japonicum ko:K09639 transmembrane protease, serine 8, putative Get druggable targets OG5_126639 All targets in OG5_126639
By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Schistosoma mansoni cercarial elastase (S01 family) Trypsin I   246 aa 241 aa 27.0 %
Drosophila melanogaster CG18420 gene product from transcript CG18420-RA Trypsin I   246 aa 243 aa 28.8 %
Loa Loa (eye worm) hypothetical protein Trypsin I   246 aa 217 aa 24.0 %
Drosophila melanogaster CG18180 gene product from transcript CG18180-RA Trypsin I   246 aa 233 aa 30.0 %
Echinococcus multilocularis subfamily S1A unassigned peptidase (S01 family) Trypsin I   246 aa 287 aa 27.9 %
Drosophila melanogaster CG9673 gene product from transcript CG9673-RB Trypsin I   246 aa 260 aa 27.7 %
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) Trypsin I   246 aa 304 aa 24.0 %
Schistosoma japonicum Transmembrane protease, serine 9, putative Trypsin I   246 aa 250 aa 23.6 %
Drosophila melanogaster CG17239 gene product from transcript CG17239-RB Trypsin I   246 aa 223 aa 34.5 %
Drosophila melanogaster Spatzle-Processing Enzyme Trypsin I   246 aa 272 aa 31.6 %
Mycobacterium tuberculosis Membrane-associated serine protease Trypsin I   246 aa 203 aa 20.7 %
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) Trypsin I   246 aa 262 aa 34.0 %
Drosophila melanogaster CG30083 gene product from transcript CG30083-RB Trypsin I   246 aa 209 aa 31.1 %
Brugia malayi Trypsin family protein Trypsin I   246 aa 270 aa 23.3 %
Onchocerca volvulus Trypsin I   246 aa 247 aa 21.1 %
Drosophila melanogaster CG3505 gene product from transcript CG3505-RA Trypsin I   246 aa 235 aa 29.8 %
Echinococcus multilocularis transmembrane protease serine 3 Trypsin I   246 aa 233 aa 33.9 %
Schistosoma mansoni cercarial elastase (S01 family) Trypsin I   246 aa 241 aa 27.0 %
Drosophila melanogaster CG13744 gene product from transcript CG13744-RA Trypsin I   246 aa 249 aa 31.3 %
Drosophila melanogaster CG3916 gene product from transcript CG3916-RA Trypsin I   246 aa 269 aa 31.6 %
Drosophila melanogaster CG30323 gene product from transcript CG30323-RB Trypsin I   246 aa 208 aa 23.1 %
Drosophila melanogaster CG31326 gene product from transcript CG31326-RA Trypsin I   246 aa 249 aa 24.5 %
Schistosoma japonicum ko:K09637 transmembrane protease, serine 6, putative Trypsin I   246 aa 242 aa 30.6 %
Echinococcus multilocularis glycoprotein Antigen 5 Trypsin I   246 aa 299 aa 21.7 %
Drosophila melanogaster CG33465 gene product from transcript CG33465-RC Trypsin I   246 aa 235 aa 25.1 %
Drosophila melanogaster CG11313 gene product from transcript CG11313-RC Trypsin I   246 aa 223 aa 31.8 %
Drosophila melanogaster Jonah 65Aii Trypsin I   246 aa 265 aa 34.3 %
Schistosoma japonicum ko:K01346 pancreatic elastase II [EC3.4.21.71], putative Trypsin I   246 aa 305 aa 23.9 %
Drosophila melanogaster CG30288 gene product from transcript CG30288-RC Trypsin I   246 aa 250 aa 29.6 %
Drosophila melanogaster CG33458 gene product from transcript CG33458-RA Trypsin I   246 aa 248 aa 28.2 %
Echinococcus granulosus Mastin Trypsin I   246 aa 306 aa 23.2 %
Echinococcus granulosus subfamily S1A unassigned peptidase S01 family Trypsin I   246 aa 287 aa 27.5 %
Schistosoma mansoni cercarial elastase (S01 family) Trypsin I   246 aa 234 aa 26.9 %
Drosophila melanogaster Jonah 66Ci Trypsin I   246 aa 272 aa 30.5 %
Echinococcus granulosus transmembrane protease serine 3 Trypsin I   246 aa 233 aa 33.5 %
Echinococcus multilocularis enteropeptidase Trypsin I   246 aa 230 aa 27.0 %
Drosophila melanogaster CG32277 gene product from transcript CG32277-RA Trypsin I   246 aa 267 aa 29.2 %
Drosophila melanogaster Jonah 99Ci Trypsin I   246 aa 237 aa 32.9 %
Drosophila melanogaster CG30287 gene product from transcript CG30287-RA Trypsin I   246 aa 259 aa 26.6 %
Onchocerca volvulus Trypsin I   246 aa 266 aa 22.2 %
Drosophila melanogaster CG31220 gene product from transcript CG31220-RB Trypsin I   246 aa 227 aa 29.5 %
Echinococcus granulosus glycoprotein Antigen 5 Trypsin I   246 aa 299 aa 23.4 %
Schistosoma japonicum Enteropeptidase, putative Trypsin I   246 aa 264 aa 24.6 %
Drosophila melanogaster CG34436 gene product from transcript CG34436-RA Trypsin I   246 aa 208 aa 24.0 %
Drosophila melanogaster CG14990 gene product from transcript CG14990-RA Trypsin I   246 aa 238 aa 28.6 %
Schistosoma mansoni aminopeptidase PILS (M01 family) Trypsin I   246 aa 301 aa 23.9 %
Echinococcus granulosus enteropeptidase Trypsin I   246 aa 230 aa 27.0 %
Drosophila melanogaster CG9733 gene product from transcript CG9733-RB Trypsin I   246 aa 262 aa 30.1 %
Drosophila melanogaster CG31267 gene product from transcript CG31267-RA Trypsin I   246 aa 234 aa 32.5 %
Neospora caninum glycine cleavage T-protein domain containing protein, putative Trypsin I   246 aa 203 aa 21.7 %
Drosophila melanogaster CG4914 gene product from transcript CG4914-RA Trypsin I   246 aa 246 aa 38.2 %
Drosophila melanogaster CG4815 gene product from transcript CG4815-RA Trypsin I   246 aa 205 aa 27.8 %
Drosophila melanogaster Jonah 65Aiii Trypsin I   246 aa 235 aa 34.9 %
Drosophila melanogaster CG10405 gene product from transcript CG10405-RB Trypsin I   246 aa 251 aa 33.9 %
Echinococcus multilocularis Mastin Trypsin I   246 aa 306 aa 23.2 %
Onchocerca volvulus Trypsin I   246 aa 210 aa 21.0 %
Schistosoma japonicum Cercarial protease precursor (EC 3.4.21.-) (Cercarial elastase), putative Trypsin I   246 aa 207 aa 24.6 %
Drosophila melanogaster CG5909 gene product from transcript CG5909-RA Trypsin I   246 aa 261 aa 28.0 %
Obtained from network model

Ranking Plot

Putative Targets List

Species Potential target Raw Global Species
Trypanosoma brucei peptidyl-prolyl cis-trans isomerase, putative 0.0159 1 0.5
Entamoeba histolytica peptidyl-prolyl cis-trans isomerase, FKBP-type, putative 0.0159 1 0.5
Trichomonas vaginalis fk506-binding protein, putative 0.0159 1 0.5
Plasmodium falciparum peptidyl-prolyl cis-trans isomerase FKBP35 0.0159 1 0.5
Mycobacterium ulcerans FK-506 binding protein, peptidyl-prolyl cis-trans isomerase 0.0159 1 0.5
Echinococcus granulosus peptidyl prolyl cis trans isomerase FKBP4 0.0159 1 1
Trypanosoma cruzi FK506-binding protein (FKBP)-type peptidyl-prolyl isomerase, putative 0.0159 1 0.5
Schistosoma mansoni immunophilin 0.0159 1 1
Brugia malayi FKBP-type peptidyl-prolyl cis-trans isomerase-59, BmFKBP59 0.0159 1 1
Trypanosoma cruzi peptidyl-prolyl cis-trans isomerase, putative 0.0159 1 0.5
Leishmania major fk506-binding protein 1-like protein 0.0159 1 0.5
Giardia lamblia 70 kDa peptidylprolyl isomerase, putative 0.0159 1 0.5
Trypanosoma brucei FK506-binding protein (FKBP)-type peptidyl-prolyl isomerase, putative 0.0159 1 0.5
Onchocerca volvulus 0.0117 0.1962 1
Loa Loa (eye worm) FKBP-type peptidyl-prolyl cis-trans isomerase-12 0.0159 1 1
Loa Loa (eye worm) hypothetical protein 0.0137 0.5858 0.4847
Schistosoma mansoni immunophilin 0.0137 0.5858 0.4847
Echinococcus granulosus peptidyl prolyl cis trans isomerase FKBP1A 0.0159 1 1
Echinococcus multilocularis fk506 binding protein 0.0159 1 1
Trichomonas vaginalis immunophilin, putative 0.0159 1 0.5
Schistosoma mansoni immunophilin FK506 binding protein FKBP12 0.0159 1 1
Trichomonas vaginalis peptidylprolyl isomerase, putative 0.0159 1 0.5
Giardia lamblia FKBP-type peptidyl-prolyl cis-trans isomerase 0.0159 1 0.5
Entamoeba histolytica peptidyl-prolyl cis-trans isomerase, FKBP-type , putative 0.0159 1 0.5
Echinococcus multilocularis peptidyl prolyl cis trans isomerase FKBP4 0.0159 1 1
Treponema pallidum peptidyl-prolyl cis-trans isomerase, FKBP-type, 22 kDa (fklB) 0.0159 1 0.5
Leishmania major peptidylprolyl isomerase-like protein 0.0159 1 0.5
Trichomonas vaginalis peptidylprolyl isomerase, putative 0.0159 1 0.5
Schistosoma mansoni immunophilin 0.0159 1 1
Loa Loa (eye worm) FKBP5 protein 0.0159 1 1
Plasmodium vivax 70 kDa peptidylprolyl isomerase, putative 0.0159 1 0.5
Trypanosoma cruzi FK506-binding protein (FKBP)-type peptidyl-prolyl isomerase, putative 0.0159 1 0.5
Trypanosoma cruzi peptidyl-prolyl cis-trans isomerase, putative 0.0159 1 0.5

Activities

Activity type Activity value Assay description Source Reference
Ki (binding) = 0.0067 uM In vitro binding affinity by measuring the inhibition of human thrombin ChEMBL. 7966150
Ki (binding) = 0.0067 uM In vitro binding affinity by measuring the inhibition of human thrombin ChEMBL. 7966150
Ki (binding) = 0.78 uM In vitro binding affinity by measuring the inhibition of bovine trypsin ChEMBL. 7966150
Ki (binding) = 0.78 uM In vitro binding affinity by measuring the inhibition of bovine trypsin ChEMBL. 7966150
Selectivity (binding) = 116 Selectivity of the compound is the ratio of Ki's against inhibition of thrombin and trypsin ChEMBL. 7966150

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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