Detailed information for compound 254049

Basic information

Technical information
  • TDR Targets ID: 254049
  • Name: N-[(4-hydroxy-3-methoxyphenyl)methyl]-2-(1H-i ndol-3-yl)-2-oxoacetamide
  • MW: 324.331 | Formula: C18H16N2O4
  • H donors: 3 H acceptors: 3 LogP: 2.32 Rotable bonds: 6
    Rule of 5 violations (Lipinski): 1
  • SMILES: COc1cc(CNC(=O)C(=O)c2c[nH]c3c2cccc3)ccc1O
  • InChi: 1S/C18H16N2O4/c1-24-16-8-11(6-7-15(16)21)9-20-18(23)17(22)13-10-19-14-5-3-2-4-12(13)14/h2-8,10,19,21H,9H2,1H3,(H,20,23)
  • InChiKey: KOTFZRCPKVQWPP-UHFFFAOYSA-N  

Network

Hover on a compound node to display the structore

Synonyms

  • N-[(4-hydroxy-3-methoxy-phenyl)methyl]-2-(1H-indol-3-yl)-2-oxo-acetamide
  • N-[(4-hydroxy-3-methoxy-phenyl)methyl]-2-(1H-indol-3-yl)-2-oxo-ethanamide
  • 2-(1H-indol-3-yl)-2-keto-N-vanillyl-acetamide
  • N-(4-hydroxy-3-methoxy-benzyl)-2-(1H-indol-3-yl)-2-keto-acetamide

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Homo sapiens gamma-aminobutyric acid (GABA) A receptor, alpha 2 Starlite/ChEMBL References
Bos taurus GABA-A receptor; anion channel Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
No druggable targets predicted by orthology data
By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Echinococcus granulosus Cys loop ligand gated ion channel subunit GABA-A receptor; anion channel   555 aa 578 aa 25.8 %
Echinococcus multilocularis Cys loop ligand gated ion channel subunit GABA-A receptor; anion channel   555 aa 583 aa 25.4 %
Onchocerca volvulus GABA-A receptor; anion channel   555 aa 516 aa 25.4 %
Onchocerca volvulus GABA-A receptor; anion channel   555 aa 466 aa 31.3 %
Brugia malayi Neurotransmitter-gated ion-channel ligand binding domain containing protein gamma-aminobutyric acid (GABA) A receptor, alpha 2 451 aa 393 aa 25.9 %

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Plasmodium vivax hypothetical protein, conserved 0.0041 0.0604 0.0477
Schistosoma mansoni nAChR subunit 0.0038 0.05 0.0721
Brugia malayi Calcitonin receptor-like protein seb-1 0.006 0.115 0.1657
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Loa Loa (eye worm) MH2 domain-containing protein 0.0116 0.2761 0.398
Echinococcus multilocularis glycine receptor subunit alpha 1 0.0038 0.05 0.0721
Onchocerca volvulus 0.0038 0.05 0.0721
Toxoplasma gondii hypothetical protein 0.0041 0.0604 0.0477
Brugia malayi Cation transporter family protein 0.0038 0.05 0.0721
Echinococcus granulosus sodium and chloride dependent glycine 0.0041 0.0604 0.087
Loa Loa (eye worm) LGC-31 protein 0.0038 0.05 0.0721
Trypanosoma brucei oxidoreductase-like protein 0.0029 0.0241 1
Loa Loa (eye worm) hypothetical protein 0.0041 0.0604 0.087
Loa Loa (eye worm) oxidoreductase 0.0025 0.0133 0.0192
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Loa Loa (eye worm) ACC-1 protein 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Brugia malayi Sodium:neurotransmitter symporter family protein 0.0041 0.0604 0.087
Onchocerca volvulus 0.0038 0.05 0.0721
Schistosoma mansoni nAChR subunit (ShAR1-alpha-like) 0.0038 0.05 0.0721
Schistosoma mansoni nAChR subunit 0.0038 0.05 0.0721
Schistosoma mansoni nAChR subunit 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Echinococcus multilocularis uncharacterized sodium dependent transporter 0.0041 0.0604 0.087
Echinococcus granulosus neuronal acetylcholine receptor subunit alpha 4 0.0038 0.05 0.0721
Echinococcus granulosus uncharacterized sodium dependent transporter 0.0041 0.0604 0.087
Brugia malayi Neurotransmitter-gated ion-channel transmembrane region family protein 0.0038 0.05 0.0721
Echinococcus multilocularis glycine receptor subunit beta 0.0038 0.05 0.0721
Brugia malayi Neurotransmitter-gated ion-channel ligand binding domain containing protein 0.0038 0.05 0.0721
Schistosoma mansoni norepinephrine/norepinephrine transporter 0.0243 0.6413 0.9243
Schistosoma mansoni sodium/chloride dependent transporter 0.0041 0.0604 0.087
Trichomonas vaginalis hypothetical protein 0.0368 1 0.5
Loa Loa (eye worm) hypothetical protein 0.0041 0.0604 0.087
Brugia malayi oxidoreductase, short chain dehydrogenase/reductase family protein 0.0025 0.0133 0.0192
Echinococcus granulosus glycine receptor subunit alpha 1 0.0038 0.05 0.0721
Schistosoma mansoni nAChR subunit 0.0038 0.05 0.0721
Echinococcus granulosus nicotinic acetylcholine receptor subunit type 0.0038 0.05 0.0721
Schistosoma mansoni sodium/chloride dependent neurotransmitter transporter 0.0041 0.0604 0.087
Schistosoma mansoni norepinephrine/norepinephrine transporter 0.0041 0.0604 0.087
Onchocerca volvulus 0.0038 0.05 0.0721
Onchocerca volvulus 0.0041 0.0604 0.087
Plasmodium falciparum transporter, putative 0.0041 0.0604 0.0477
Schistosoma mansoni sodium/chloride dependent transporter 0.0041 0.0604 0.087
Loa Loa (eye worm) Sodium:neurotransmitter symporter family protein 0.0041 0.0604 0.087
Onchocerca volvulus 0.0038 0.05 0.0721
Schistosoma mansoni sodium/chloride dependent neurotransmitter transporter 0.0041 0.0604 0.087
Schistosoma mansoni peripheral-type benzodiazepine receptor 0.0261 0.6938 1
Loa Loa (eye worm) hypothetical protein 0.0041 0.0604 0.087
Mycobacterium leprae NADH-DEPENDENT ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE INHA (NADH-DEPENDENT ENOYL-ACP REDUCTASE) 0.0368 1 1
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Echinococcus granulosus serotonin transporter 0.0243 0.6413 0.9243
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Onchocerca volvulus 0.0041 0.0604 0.087
Brugia malayi Hypothetical glycine receptor like protein T20B12.9 in chromosome III 0.0038 0.05 0.0721
Trypanosoma cruzi oxidoreductase-like protein, putative 0.0029 0.0241 1
Loa Loa (eye worm) hypothetical protein 0.0261 0.6938 1
Brugia malayi Neurotransmitter-gated ion-channel ligand binding domain containing protein 0.0038 0.05 0.0721
Toxoplasma gondii hypothetical protein 0.0041 0.0604 0.0477
Schistosoma mansoni dihydropteridine reductase 0.0025 0.0133 0.0192
Brugia malayi hypothetical protein 0.0105 0.2453 0.3536
Echinococcus granulosus uncharacterized sodium dependent transporter 0.0041 0.0604 0.087
Echinococcus multilocularis sodium and chloride dependent glycine 0.0041 0.0604 0.087
Onchocerca volvulus 0.0261 0.6938 1
Echinococcus granulosus glycine receptor subunit beta 0.0038 0.05 0.0721
Echinococcus granulosus glycine receptor subunit alpha 1 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0243 0.6413 0.9243
Loa Loa (eye worm) serotonin transporter b 0.0243 0.6413 0.9243
Brugia malayi Neurotransmitter-gated ion-channel ligand binding domain containing protein 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0041 0.0604 0.087
Loa Loa (eye worm) retinol dehydrogenase 12 0.0025 0.0133 0.0192
Entamoeba histolytica 3-oxoacyl-(acyl-carrier protein) reductase, putative 0.0025 0.0133 1
Schistosoma mansoni hypothetical protein 0.0041 0.0601 0.0866
Echinococcus multilocularis neuronal acetylcholine receptor subunit alpha 4 0.0038 0.05 0.0721
Echinococcus granulosus glycine receptor subunit alpha 1 0.0038 0.05 0.0721
Schistosoma mansoni nAChR subunit 0.0038 0.05 0.0721
Echinococcus multilocularis 3 oxoacyl acyl carrier protein reductase 0.0025 0.0133 0.0192
Schistosoma mansoni sodium-dependent neurotransmitter transporter 0.0041 0.0604 0.087
Schistosoma mansoni nAChR subunit (ShAR1-beta-like) 0.0038 0.05 0.0721
Loa Loa (eye worm) Sodium:neurotransmitter symporter family protein 0.0041 0.0604 0.087
Schistosoma mansoni Cys-loop ligand gated ion channel subunit 0.0038 0.05 0.0721
Onchocerca volvulus 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0261 0.6938 1
Echinococcus granulosus nAChR subunit 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0261 0.6938 1
Echinococcus granulosus nicotinic acetylcholine receptor beta 1 subunit 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0025 0.0133 0.0192
Echinococcus multilocularis sodium:chloride dependent neurotransmitter 0.0041 0.0604 0.087
Plasmodium vivax amine transporter, putative 0.0041 0.0604 0.0477
Echinococcus multilocularis sodium and chloride dependent glycine 0.0041 0.0604 0.087
Mycobacterium ulcerans tryptophan-rich sensory protein 0.0261 0.6938 0.6897
Plasmodium falciparum enoyl-acyl carrier reductase 0.0368 1 1
Echinococcus granulosus 3 oxoacyl acyl carrier protein reductase 0.0025 0.0133 0.0192
Echinococcus granulosus sodium and chloride dependent glycine 0.0041 0.0604 0.087
Wolbachia endosymbiont of Brugia malayi enoyl-ACP reductase 0.0368 1 1
Brugia malayi nicotinic acetylcholine receptor beta-1 chain precursor 0.0038 0.05 0.0721
Schistosoma mansoni 3-oxoacyl-[ACP] reductase 0.0025 0.0133 0.0192
Schistosoma mansoni sodium-dependent neurotransmitter transporter 0.0041 0.0604 0.087
Toxoplasma gondii Sodium:neurotransmitter symporter family protein 0.0041 0.0604 0.0477
Brugia malayi Neurotransmitter-gated ion-channel transmembrane region family protein 0.0038 0.05 0.0721
Echinococcus multilocularis glycine receptor subunit alpha 1 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0041 0.0601 0.0866
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Schistosoma mansoni Cys-loop ligand gated ion channel subunit 0.0038 0.05 0.0721
Echinococcus multilocularis nicotinic acetylcholine receptor subunit alpha 8 0.0038 0.05 0.0721
Schistosoma mansoni nAChR subunit 0.0038 0.05 0.0721
Onchocerca volvulus 0.0025 0.0133 0.0192
Mycobacterium ulcerans enoyl-(acyl carrier protein) reductase 0.0368 1 1
Echinococcus multilocularis nicotinic acetylcholine receptor beta 1 subunit 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Loa Loa (eye worm) transcription factor SMAD2 0.0116 0.2761 0.398
Echinococcus multilocularis translocator protein 0.0261 0.6938 1
Onchocerca volvulus 0.0243 0.6413 0.9243
Onchocerca volvulus Putative nachr subunit 0.0038 0.05 0.0721
Brugia malayi acetylcholine receptor alpha subunit precursor, putative 0.0038 0.05 0.0721
Loa Loa (eye worm) excitatory GABA receptor EXP-1A 0.0038 0.05 0.0721
Brugia malayi Corticotropin releasing factor receptor 2 precursor, putative 0.006 0.115 0.1657
Loa Loa (eye worm) nicotinic acetylcholine receptor alpha subunit 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Mycobacterium ulcerans 3-alpha-hydroxysteroid dehydrogenase 0.0029 0.0241 0.011
Onchocerca volvulus 0.0261 0.6938 1
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Echinococcus multilocularis glycine receptor subunit alpha 1 0.0038 0.05 0.0721
Echinococcus granulosus acetylcholine receptor subunit beta 1 0.0038 0.05 0.0721
Brugia malayi nicotinic acetylcholine receptor alpha subunit, putative 0.0038 0.05 0.0721
Leishmania major oxidoreductase-like protein 0.0029 0.0241 1
Brugia malayi Neurotransmitter-gated ion-channel transmembrane region family protein 0.0038 0.05 0.0721
Brugia malayi Cation transporter family protein 0.0038 0.05 0.0721
Brugia malayi excitatory GABA receptor EXP-1A 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0041 0.0604 0.087
Brugia malayi Sodium:neurotransmitter symporter family protein 0.0041 0.0604 0.087
Loa Loa (eye worm) 3-hydroxyacyl-CoA dehydrogenase type II 0.0025 0.0133 0.0192
Chlamydia trachomatis Ssodium-dependent amino acid transporter 0.0041 0.0604 0.0477
Toxoplasma gondii Sodium:neurotransmitter symporter family protein 0.0041 0.0604 0.0477
Schistosoma mansoni norepinephrine/norepinephrine transporter 0.0041 0.0604 0.087
Echinococcus granulosus nicotinic acetylcholine receptor alpha subunit 0.0038 0.05 0.0721
Loa Loa (eye worm) norepinephrine transporter 0.0243 0.6413 0.9243
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Loa Loa (eye worm) ligand-Gated ion Channel family member 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Echinococcus multilocularis serotonin transporter 0.0243 0.6413 0.9243
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.006 0.115 0.1657
Schistosoma mansoni nAChR subunit 0.0038 0.05 0.0721
Echinococcus granulosus translocator protein 0.0261 0.6938 1
Echinococcus granulosus glycine receptor subunit beta 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Loa Loa (eye worm) nicotinic acetylcholine receptor non-alpha subunit 0.0038 0.05 0.0721
Toxoplasma gondii Sodium:neurotransmitter symporter family protein 0.0041 0.0604 0.0477
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Schistosoma mansoni sodium-dependent neurotransmitter transporter 0.0041 0.0604 0.087
Plasmodium falciparum amino acid transporter, putative 0.0041 0.0604 0.0477
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Toxoplasma gondii enoyl-acyl carrier reductase ENR 0.0368 1 1
Loa Loa (eye worm) hypothetical protein 0.0038 0.05 0.0721
Loa Loa (eye worm) acetylcholine receptor alpha subunit 0.0038 0.05 0.0721
Brugia malayi gamma-aminobutyric-acid receptor beta subunit precursor 0.0038 0.05 0.0721
Schistosoma mansoni sodium-dependent amino acid transporter 0.0041 0.0604 0.087
Echinococcus granulosus Cys loop ligand gated ion channel subunit 0.0038 0.05 0.0721
Loa Loa (eye worm) glutamate-gated chloride channel alpha3A subunit 0.0038 0.05 0.0721
Brugia malayi oxidoreductase, short chain dehydrogenase/reductase family protein 0.0025 0.0133 0.0192
Plasmodium vivax enoyl-acyl carrier protein reductase 0.0368 1 1
Loa Loa (eye worm) hypothetical protein 0.0261 0.6938 1
Brugia malayi MH2 domain containing protein 0.0116 0.2761 0.398
Onchocerca volvulus 0.0261 0.6938 1
Brugia malayi Cation transporter family protein 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0243 0.6413 0.9243
Echinococcus multilocularis nicotinic acetylcholine receptor alpha subunit 0.0038 0.05 0.0721
Loa Loa (eye worm) pigment dispersing factor receptor c 0.006 0.115 0.1657
Mycobacterium ulcerans short-chain type dehydrogenase/reductase 0.0029 0.0241 0.011
Brugia malayi Sodium:neurotransmitter symporter family protein 1, putative 0.0041 0.0604 0.087
Echinococcus granulosus sodium dependent neurotransmitter transporter 0.0041 0.0604 0.087
Brugia malayi latrophilin 2 splice variant baaae 0.0041 0.0601 0.0866
Onchocerca volvulus 0.0041 0.0604 0.087
Echinococcus granulosus sodium:chloride dependent neurotransmitter 0.0041 0.0604 0.087
Echinococcus multilocularis nAChR subunit 0.0038 0.05 0.0721
Echinococcus multilocularis nicotinic acetylcholine receptor a11 subunit 0.0038 0.05 0.0721
Echinococcus multilocularis acetylcholine receptor subunit beta 1 0.0038 0.05 0.0721
Schistosoma mansoni Cys-loop ligand gated ion channel subunit 0.0038 0.05 0.0721
Echinococcus multilocularis glycine receptor subunit beta 0.0038 0.05 0.0721
Treponema pallidum sodium- and chloride- dependent transporter 0.0243 0.6413 0.5
Onchocerca volvulus 0.0038 0.05 0.0721
Echinococcus multilocularis Cys loop ligand gated ion channel subunit 0.0038 0.05 0.0721
Echinococcus multilocularis sodium dependent neurotransmitter transporter 0.0041 0.0604 0.087
Echinococcus granulosus nicotinic acetylcholine receptor subunit alpha 8 0.0038 0.05 0.0721
Mycobacterium ulcerans short chain dehydrogenase 0.0029 0.0241 0.011
Brugia malayi acetylcholine receptor, alpha-type subunit unc-38 precursor 0.0038 0.05 0.0721
Brugia malayi Neurotransmitter-gated ion-channel ligand binding domain containing protein 0.0038 0.05 0.0721
Toxoplasma gondii 2,4-dienoyl CoA reductase 2, peroxisomal family protein 0.0029 0.0241 0.011
Schistosoma mansoni sodium/chloride dependent transporter 0.0243 0.6413 0.9243
Loa Loa (eye worm) solute carrier family 6 member 4 0.0243 0.6413 0.9243
Mycobacterium tuberculosis Probable oxidoreductase 0.0029 0.0241 0.011
Brugia malayi Sodium:neurotransmitter symporter family protein 0.0243 0.6413 0.9243
Brugia malayi Neurotransmitter-gated ion-channel ligand binding domain containing protein 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0243 0.6413 0.9243
Onchocerca volvulus 0.0261 0.6938 1
Brugia malayi acetylcholine receptor protein, alpha-like chain, putative 0.0038 0.05 0.0721
Loa Loa (eye worm) ACC-1 protein 0.0038 0.05 0.0721
Brugia malayi hypothetical protein 0.0041 0.0604 0.087
Mycobacterium ulcerans short-chain type dehydrogenase/reductase 0.0029 0.0241 0.011
Echinococcus granulosus nicotinic acetylcholine receptor a11 subunit 0.0038 0.05 0.0721
Brugia malayi TspO/MBR family protein 0.0261 0.6938 1
Brugia malayi Neurotransmitter-gated ion-channel ligand binding domain containing protein 0.0038 0.05 0.0721
Loa Loa (eye worm) hypothetical protein 0.0041 0.0604 0.087
Loa Loa (eye worm) hypothetical protein 0.0041 0.0604 0.087
Leishmania major pteridine reductase 1 0.0029 0.0241 1
Schistosoma mansoni sodium/chloride dependent neurotransmitter transporter 0.0041 0.0604 0.087
Brugia malayi Sodium:neurotransmitter symporter family protein 0.0041 0.0604 0.087
Mycobacterium tuberculosis NADH-dependent enoyl-[acyl-carrier-protein] reductase InhA (NADH-dependent enoyl-ACP reductase) 0.0368 1 1
Schistosoma mansoni nAChR subunit (ShAR1-beta2-like) 0.0038 0.05 0.0721
Onchocerca volvulus 0.0029 0.0241 0.0348

Activities

Activity type Activity value Assay description Source Reference
GABA ratio (binding) = 1 Gamma AminoButyric Acid(GABA) ratio is the Ki without GABA / Ki with GABA ChEMBL. 8978839
Inhibition (binding) = 96 % In vitro inhibition of [3H]- flunitrazepam binding to GABA-A central benzodiazepine receptor of bovine cortical membranes at 10 uM ChEMBL. 8978839
Inhibition (binding) = 96 % In vitro inhibition of [3H]- flunitrazepam binding to GABA-A central benzodiazepine receptor of bovine cortical membranes at 10 uM ChEMBL. 8978839
Ki (functional) = 6.85 The compound was tested for benzodiazepine receptor inverse agonist activity ChEMBL. 10602702
Ki (binding) = 140 nM In vitro inhibition of [3H]- flunitrazepam binding to GABA-A benzodiazepine receptor of bovine cortical membranes ChEMBL. 8978839
Ki (binding) = 140 nM In vitro inhibition of [3H]- flunitrazepam binding to GABA-A benzodiazepine receptor of bovine cortical membranes ChEMBL. 8978839
Log 1/Ki (functional) = 6.85 The compound was tested for benzodiazepine receptor inverse agonist activity ChEMBL. 10602702

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

2 literature references were collected for this gene.

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