Detailed information for compound 349226

Basic information

Technical information
  • TDR Targets ID: 349226
  • Name: 1-benzyl-2-pyridin-2-ylbenzimidazole
  • MW: 285.343 | Formula: C19H15N3
  • H donors: 0 H acceptors: 2 LogP: 3.66 Rotable bonds: 3
    Rule of 5 violations (Lipinski): 1
  • SMILES: c1ccc(cc1)Cn1c(nc2c1cccc2)c1ccccn1
  • InChi: 1S/C19H15N3/c1-2-8-15(9-3-1)14-22-18-12-5-4-10-16(18)21-19(22)17-11-6-7-13-20-17/h1-13H,14H2
  • InChiKey: XBAHLDPYUIFKLE-UHFFFAOYSA-N  

Network

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Synonyms

  • 1-benzyl-2-(2-pyridyl)benzimidazole
  • 1-(phenylmethyl)-2-pyridin-2-yl-benzimidazole
  • 1-(phenylmethyl)-2-pyridin-2-ylbenzimidazole
  • 1-(phenylmethyl)-2-(2-pyridyl)benzimidazole
  • 1-(benzyl)-2-(2-pyridyl)benzimidazole
  • BAS 00631457
  • ZINC00302074
  • 1-Benzyl-2-pyridin-2-yl-1H-benzoimidazole

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Escherichia coli methionine aminopeptidase Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Plasmodium knowlesi methionine aminopeptidase 1b, putative Get druggable targets OG5_126721 All targets in OG5_126721
Loa Loa (eye worm) methionine aminopeptidase type I Get druggable targets OG5_126721 All targets in OG5_126721
Trypanosoma brucei methionine aminopeptidase, type I, putative Get druggable targets OG5_126721 All targets in OG5_126721
Leishmania major methionine aminopeptidase, putative,metallo-peptidase, Clan MG, Family M24 Get druggable targets OG5_126721 All targets in OG5_126721
Plasmodium falciparum methionine aminopeptidase 1a, putative Get druggable targets OG5_126721 All targets in OG5_126721
Cryptosporidium parvum methionine aminopeptidase with MYND finger at N-terminus Get druggable targets OG5_126721 All targets in OG5_126721
Treponema pallidum methionine aminopeptidase (map) Get druggable targets OG5_126721 All targets in OG5_126721
Trypanosoma cruzi metallo- peptidase, Clan MG, Family M24 Get druggable targets OG5_126721 All targets in OG5_126721
Trypanosoma brucei gambiense methionine aminopeptidase, putative,metallo- peptidase, Clan MG, Family M24 Get druggable targets OG5_126721 All targets in OG5_126721
Plasmodium vivax methionine aminopeptidase 1b, putative Get druggable targets OG5_126721 All targets in OG5_126721
Toxoplasma gondii methionine aminopeptidase, type i, putative Get druggable targets OG5_126721 All targets in OG5_126721
Candida albicans methionine aminopeptidase Get druggable targets OG5_126721 All targets in OG5_126721
Echinococcus multilocularis methionyl aminopeptidase 1 (M24 family) Get druggable targets OG5_126721 All targets in OG5_126721
Chlamydia trachomatis methionine aminopeptidase Get druggable targets OG5_126721 All targets in OG5_126721
Trypanosoma brucei methionine aminopeptidase, putative Get druggable targets OG5_126721 All targets in OG5_126721
Babesia bovis methionine aminopeptidase, putative Get druggable targets OG5_126721 All targets in OG5_126721
Leishmania infantum methionine aminopeptidase, putative,metallo-peptidase, Clan MG, Family M24 Get druggable targets OG5_126721 All targets in OG5_126721
Plasmodium berghei methionine aminopeptidase 1b, putative Get druggable targets OG5_126721 All targets in OG5_126721
Echinococcus multilocularis methionyl aminopeptidase 1 (M24 family) Get druggable targets OG5_126721 All targets in OG5_126721
Theileria parva methionine aminopeptidase, type I, putative Get druggable targets OG5_126721 All targets in OG5_126721
Plasmodium berghei methionine aminopeptidase 1a, putative Get druggable targets OG5_126721 All targets in OG5_126721
Cryptosporidium hominis methionine aminopeptidase 1 (MetAP 1) (MAP 1) (Peptidase M 1) Get druggable targets OG5_126721 All targets in OG5_126721
Mycobacterium tuberculosis Methionine aminopeptidase MapB (map) (peptidase M) Get druggable targets OG5_126721 All targets in OG5_126721
Toxoplasma gondii methionine aminopeptidase Get druggable targets OG5_126721 All targets in OG5_126721
Wolbachia endosymbiont of Brugia malayi methionine aminopeptidase Get druggable targets OG5_126721 All targets in OG5_126721
Neospora caninum methionine aminopeptidase, putative Get druggable targets OG5_126721 All targets in OG5_126721
Mycobacterium ulcerans methionine aminopeptidase MapB Get druggable targets OG5_126721 All targets in OG5_126721
Brugia malayi Methionine aminopeptidase protein type I Get druggable targets OG5_126721 All targets in OG5_126721
Echinococcus granulosus methionyl aminopeptidase 1 M24 family Get druggable targets OG5_126721 All targets in OG5_126721
Schistosoma japonicum ko:K01265 methionyl aminopeptidase [EC3.4.11.18], putative Get druggable targets OG5_126721 All targets in OG5_126721
Mycobacterium leprae PROBABLE METHIONINE AMINOPEPTIDASE MAPB (MAP) (PEPTIDASE M) Get druggable targets OG5_126721 All targets in OG5_126721
Trypanosoma cruzi metallo- peptidase, Clan MG, Family M24 Get druggable targets OG5_126721 All targets in OG5_126721
Babesia bovis methionine aminopeptidase, putative Get druggable targets OG5_126721 All targets in OG5_126721
Schistosoma japonicum Methionine aminopeptidase 1, putative Get druggable targets OG5_126721 All targets in OG5_126721
Leishmania mexicana methionine aminopeptidase Get druggable targets OG5_126721 All targets in OG5_126721
Plasmodium yoelii methionine aminopeptidase, type I Get druggable targets OG5_126721 All targets in OG5_126721
Leishmania donovani metallo- peptidase, Clan MG, Family M24 Get druggable targets OG5_126721 All targets in OG5_126721
Schistosoma mansoni methionyl aminopeptidase 1 (M24 family) Get druggable targets OG5_126721 All targets in OG5_126721
Mycobacterium ulcerans methionine aminopeptidase Get druggable targets OG5_126721 All targets in OG5_126721
Schistosoma mansoni methionyl aminopeptidase 1 (M24 family) Get druggable targets OG5_126721 All targets in OG5_126721
Trypanosoma brucei metallo- peptidase, Clan MG, Family M24 Get druggable targets OG5_126721 All targets in OG5_126721
Plasmodium falciparum methionine aminopeptidase 1b, putative Get druggable targets OG5_126721 All targets in OG5_126721
Toxoplasma gondii methionine aminopeptidase Get druggable targets OG5_126721 All targets in OG5_126721
Trypanosoma congolense metallo- peptidase, Clan MG, Family M24 Get druggable targets OG5_126721 All targets in OG5_126721
Mycobacterium tuberculosis Methionine aminopeptidase MapA (map) (peptidase M) (MetAP) Get druggable targets OG5_126721 All targets in OG5_126721
Neospora caninum methionine aminopeptidase, putative Get druggable targets OG5_126721 All targets in OG5_126721
Neospora caninum methionine aminopeptidase, putative Get druggable targets OG5_126721 All targets in OG5_126721
Schistosoma japonicum ko:K01265 methionyl aminopeptidase [EC3.4.11.18], putative Get druggable targets OG5_126721 All targets in OG5_126721
Plasmodium knowlesi methionine aminopeptidase 1a, putative Get druggable targets OG5_126721 All targets in OG5_126721
Plasmodium vivax methionine aminopeptidase 1a, putative Get druggable targets OG5_126721 All targets in OG5_126721
Theileria parva methionine aminopeptidase, type I, putative Get druggable targets OG5_126721 All targets in OG5_126721
Leishmania braziliensis methionine aminopeptidase, putative,metallo-peptidase, Clan MG, Family M24 Get druggable targets OG5_126721 All targets in OG5_126721
Plasmodium yoelii methionine aminopeptidase, type I, putative Get druggable targets OG5_126721 All targets in OG5_126721
Candida albicans methionine aminopeptidase Get druggable targets OG5_126721 All targets in OG5_126721
Mycobacterium leprae PROBABLE METHIONINE AMINOPEPTIDASE MAPA (MAP) (PEPTIDASE M) (MetAP) Get druggable targets OG5_126721 All targets in OG5_126721

By sequence similarity to non orthologous known druggable targets
No druggable targets predicted by sequence similarity

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Loa Loa (eye worm) nuclear hormone receptor family member nhr-40 0.0077 0.4308 1
Echinococcus granulosus nuclear receptor 2DBD gamma 0.0077 0.4308 0.4308
Loa Loa (eye worm) Gln-2 protein 0.0071 0.3293 0.7643
Echinococcus granulosus retinoic acid receptor rxr beta a 0.0077 0.4308 0.4308
Loa Loa (eye worm) nuclear hormone receptor family member nhr-14 0.0077 0.4308 1
Schistosoma mansoni nuclear receptor 2DBD-gamma 0.0077 0.4308 0.4308
Brugia malayi nuclear hormone receptor 0.0077 0.4308 1
Echinococcus multilocularis hepatocyte nuclear factor 4 alpha 0.0077 0.4308 0.4308
Brugia malayi Nuclear hormone receptor family member nhr-41 0.0077 0.4308 1
Schistosoma mansoni retinoic acid receptor RXR 0.0077 0.4308 0.4308
Schistosoma mansoni steroid hormone receptor ad4bp 0.0077 0.4308 0.4308
Loa Loa (eye worm) hypothetical protein 0.0077 0.4308 1
Schistosoma mansoni glutamine synthetase 1 2 (glutamate-amonia ligase) (gs) 0.011 1 1
Schistosoma mansoni Tr4/Tr2 (homologue) 0.0077 0.4308 0.4308
Echinococcus multilocularis nuclear receptor 2DBD gamma 0.0077 0.4308 0.4308
Echinococcus granulosus Nuclear hormone receptor family member nhr 41 0.0077 0.4308 0.4308
Leishmania major glutamine synthetase, putative 0.011 1 1
Loa Loa (eye worm) steroid hormone receptor 0.0077 0.4308 1
Echinococcus multilocularis thyroid hormone receptor alpha 0.0077 0.4308 0.4308
Loa Loa (eye worm) hypothetical protein 0.0077 0.4308 1
Loa Loa (eye worm) nuclear hormone receptor family member nhr-49 0.0077 0.4308 1
Loa Loa (eye worm) nuclear hormone receptor family member nhr-1 0.0077 0.4308 1
Plasmodium vivax glutamine synthetase, putative 0.0071 0.3293 1
Brugia malayi Nuclear hormone receptor family member nhr-49 0.0077 0.4308 1
Plasmodium falciparum glutamine synthetase, putative 0.0071 0.3293 1
Mycobacterium ulcerans glutamine synthetase 0.0071 0.3293 1
Brugia malayi Ligand-binding domain of nuclear hormone receptor family protein 0.0077 0.4308 1
Brugia malayi Nuclear hormone receptor family member nhr-25 0.0077 0.4308 1
Onchocerca volvulus 0.0077 0.4308 1
Brugia malayi Nuclear hormone receptor family member nhr-40 0.0077 0.4308 1
Brugia malayi Nuclear hormone receptor family member nhr-19 0.0077 0.4308 1
Schistosoma mansoni nuclear hormone receptor nor-1/nor-2 0.0077 0.4308 0.4308
Echinococcus granulosus nuclear receptor 2DBD gamma 0.0077 0.4308 0.4308
Echinococcus granulosus COUP TF:Svp nuclear hormone receptor 0.0077 0.4308 0.4308
Toxoplasma gondii glutamine synthetase, type I, putative 0.0071 0.3293 1
Echinococcus multilocularis COUP TF:Svp nuclear hormone receptor 0.0077 0.4308 0.4308
Loa Loa (eye worm) nuclear hormone receptor family member nhr-31 0.0077 0.4308 1
Brugia malayi nuclear receptor NHR-88 0.0077 0.4308 1
Echinococcus granulosus hepatocyte nuclear factor 4 alpha 0.0077 0.4308 0.4308
Onchocerca volvulus Steroid hormone receptor family member cnr14 homolog 0.0077 0.4308 1
Loa Loa (eye worm) hypothetical protein 0.0077 0.4308 1
Echinococcus granulosus FTZ F1 alpha 0.0077 0.4308 0.4308
Loa Loa (eye worm) hypothetical protein 0.0077 0.4308 1
Schistosoma mansoni FTZ-F1 nuclear receptor-like protein 0.0077 0.4308 0.4308
Loa Loa (eye worm) nuclear Hormone Receptor family member 0.0077 0.4308 1
Echinococcus multilocularis glutamine synthetase 0.011 1 1
Brugia malayi Nuclear hormone receptor family member nhr-3 0.0077 0.4308 1
Brugia malayi Ligand-binding domain of nuclear hormone receptor family protein 0.0077 0.4308 1
Brugia malayi Nuclear hormone receptor family member nhr-31 0.0077 0.4308 1
Schistosoma mansoni coup transcription factor 0.0077 0.4308 0.4308
Wolbachia endosymbiont of Brugia malayi methionine aminopeptidase 0.0052 0 0.5
Brugia malayi steroid hormone receptor 0.0077 0.4308 1
Trypanosoma brucei glutamine synthetase, putative 0.011 1 1
Mycobacterium tuberculosis Probable glutamine synthetase GlnA2 (glutamine synthase) (GS-II) 0.0071 0.3293 1
Brugia malayi Nuclear hormone receptor family member nhr-25 0.0077 0.4308 1
Loa Loa (eye worm) hypothetical protein 0.0077 0.4308 1
Echinococcus multilocularis FTZ F1 nuclear receptor protein 0.0077 0.4308 0.4308
Mycobacterium ulcerans glutamine synthetase GlnA1 0.0071 0.3293 1
Trypanosoma cruzi glutamine synthetase, putative 0.011 1 1
Brugia malayi photoreceptor-specific nuclear receptor 0.0077 0.4308 1
Echinococcus multilocularis ecdysone induced protein 78C 0.0077 0.4308 0.4308
Brugia malayi Nuclear hormone receptor family member nhr-19 0.0077 0.4308 1
Echinococcus granulosus ecdysone induced protein 78C 0.0077 0.4308 0.4308
Echinococcus multilocularis FTZ F1 alpha 0.0077 0.4308 0.4308
Loa Loa (eye worm) hypothetical protein 0.0077 0.4308 1
Schistosoma mansoni nuclear hormone receptor 0.0077 0.4308 0.4308
Echinococcus granulosus FTZ F1 nuclear receptor protein 0.0077 0.4308 0.4308
Chlamydia trachomatis methionine aminopeptidase 0.0052 0 0.5
Brugia malayi Steroid receptor seven-up type 2 0.0077 0.4308 1
Echinococcus multilocularis Nuclear hormone receptor family member nhr 41 0.0077 0.4308 0.4308
Loa Loa (eye worm) nuclear hormone receptor family member nhr-41 0.0077 0.4308 1
Brugia malayi Nuclear hormone receptor family member nhr-1 0.0077 0.4308 1
Brugia malayi ecdysteroid receptor 0.0077 0.4308 1
Schistosoma mansoni photoreceptor-specific nuclear receptor related 0.0077 0.4308 0.4308
Brugia malayi Nuclear hormone receptor family member nhr-14 0.0077 0.4308 1
Schistosoma mansoni thyroid hormone receptor 0.0077 0.4308 0.4308
Onchocerca volvulus Protein ultraspiracle homolog 0.0077 0.4308 1
Schistosoma mansoni thyroid hormone receptor 0.0077 0.4308 0.4308
Treponema pallidum methionine aminopeptidase (map) 0.0052 0 0.5
Schistosoma mansoni retinoid-x-receptor (RXR) 0.0077 0.4308 0.4308
Mycobacterium leprae PROBABLE GLUTAMINE SYNTHETASE GLNA2 (GLUTAMINE SYNTHASE) (GS-II) 0.0071 0.3293 1
Loa Loa (eye worm) hypothetical protein 0.0077 0.4308 1
Schistosoma mansoni RAR-like nuclear receptor 0.0077 0.4308 0.4308
Onchocerca volvulus Bile acid receptor homolog 0.0077 0.4308 1
Echinococcus multilocularis nuclear receptor 2DBD gamma 0.0077 0.4308 0.4308
Loa Loa (eye worm) hypothetical protein 0.0077 0.4308 1
Trypanosoma cruzi glutamine synthetase, putative 0.011 1 1
Brugia malayi Nuclear hormone receptor-like 1 0.0077 0.4308 1

Activities

Activity type Activity value Assay description Source Reference
IC50 (binding) = 0.992 uM Inhibition of Co2+ loaded MetAP expressed in Escherichia coli ChEMBL. 16420038
IC50 (binding) = 0.992 uM Inhibition of Co2+ loaded MetAP expressed in Escherichia coli ChEMBL. 16420038
Inhibition (binding) Inhibition of human MetAP1 at 25 uM ChEMBL. 20621724
Inhibition (binding) Inhibition of human MetAP2 expressed in baculovirus infected Sf9 cells at 25 uM ChEMBL. 20621724
Inhibition (binding) Inhibition of Mn2+ loaded MetAP expressed in Escherichia coli at upto 10 uM ChEMBL. 16420038
Inhibition (binding) 0 Inhibition of Mn2+ loaded MetAP expressed in Escherichia coli at upto 10 uM ChEMBL. 16420038

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

2 literature references were collected for this gene.

If you have references for this compound, please enter them in a user comment (below) or Contact us.