Detailed information for compound 39712

Basic information

Technical information
  • TDR Targets ID: 39712
  • Name: 1-[5-(ethoxymethyl)-4-hydroxyoxolan-2-yl]-5-( trifluoromethyl)pyrimidine-2,4-dione
  • MW: 324.253 | Formula: C12H15F3N2O5
  • H donors: 2 H acceptors: 3 LogP: -0.08 Rotable bonds: 5
    Rule of 5 violations (Lipinski): 1
  • SMILES: CCOCC1OC(CC1O)n1cc(c(=O)[nH]c1=O)C(F)(F)F
  • InChi: 1S/C12H15F3N2O5/c1-2-21-5-8-7(18)3-9(22-8)17-4-6(12(13,14)15)10(19)16-11(17)20/h4,7-9,18H,2-3,5H2,1H3,(H,16,19,20)
  • InChiKey: YUONEWZALBQEAM-UHFFFAOYSA-N  

Network

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Synonyms

  • 1-[5-(ethoxymethyl)-4-hydroxy-tetrahydrofuran-2-yl]-5-(trifluoromethyl)pyrimidine-2,4-dione
  • 1-[5-(ethoxymethyl)-4-hydroxy-2-tetrahydrofuranyl]-5-(trifluoromethyl)pyrimidine-2,4-dione
  • 1-[5-(ethoxymethyl)-4-hydroxy-oxolan-2-yl]-5-(trifluoromethyl)pyrimidine-2,4-dione
  • 1-[5-(ethoxymethyl)-4-hydroxy-tetrahydrofuran-2-yl]-5-(trifluoromethyl)pyrimidine-2,4-quinone

Targets

Known targets for this compound

No curated genes were found associated with this compound

Predicted pathogen targets for this compound

By orthology
No druggable targets predicted by orthology data
By sequence similarity to non orthologous known druggable targets
No druggable targets predicted by sequence similarity

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Mycobacterium tuberculosis Probable thymidylate synthase ThyA (ts) (TSASE) 0.5448 0.3633 0.2353
Trypanosoma brucei DNA topoisomerase ii 0.153 0.0945 0.2597
Loa Loa (eye worm) hypothetical protein 0.153 0.0945 0.2597
Mycobacterium leprae Probable DNA gyrase (subunit A) GyrA (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (Type II DNA topoisomerase) 0.7022 0.4713 1
Brugia malayi Probable DNA topoisomerase II 0.153 0.0945 0.2597
Echinococcus multilocularis S adenosylmethionine synthase type 1 0.0155 0.0003 0.0007
Echinococcus granulosus thymidylate synthase 0.5448 0.3633 1
Mycobacterium ulcerans DNA gyrase subunit A 1.4732 1 1
Mycobacterium ulcerans thymidylate synthase 0.5448 0.3633 0.3631
Echinococcus multilocularis DNA topoisomerase 2 alpha 0.153 0.0945 0.2602
Schistosoma mansoni S-adenosylmethionine synthetase 0.0155 0.0003 0.0007
Mycobacterium tuberculosis DNA gyrase (subunit A) GyrA (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (type II DNA topoisomerase) 1.4732 1 1
Toxoplasma gondii DNA topoisomerase 2, putative 0.153 0.0945 0.0943
Wolbachia endosymbiont of Brugia malayi DNA gyrase subunit A 1.4732 1 1
Echinococcus granulosus DNA topoisomerase 2 alpha 0.153 0.0945 0.2602
Plasmodium vivax bifunctional dihydrofolate reductase-thymidylate synthase, putative 0.5448 0.3633 0.3631
Trypanosoma cruzi dihydrofolate reductase-thymidylate synthase, putative 0.2592 0.1674 0.4604
Brugia malayi DNA topoisomerase II, alpha isozyme 0.153 0.0945 0.2597
Brugia malayi hypothetical protein 0.2592 0.1674 0.4604
Entamoeba histolytica DNA topoisomerase II, putative 0.153 0.0945 1
Schistosoma mansoni bifunctional dihydrofolate reductase-thymidylate synthase 0.5448 0.3633 1
Trichomonas vaginalis DNA topoisomerase II, putative 0.153 0.0945 0.5641
Brugia malayi DNA gyrase/topoisomerase IV, A subunit family protein 0.153 0.0945 0.2597
Treponema pallidum DNA gyrase, subunit A (gyrA) 1.4732 1 1
Echinococcus multilocularis thymidylate synthase 0.5448 0.3633 1
Plasmodium vivax DNA gyrase subunit A, putative 1.4732 1 1
Leishmania major mitochondrial DNA topoisomerase II 0.153 0.0945 0.2597
Plasmodium falciparum DNA gyrase subunit A 1.4732 1 1
Brugia malayi thymidylate synthase 0.5448 0.3633 1
Leishmania major DNA topoisomerase ii 0.153 0.0945 0.2597
Onchocerca volvulus 0.5448 0.3633 1
Trypanosoma cruzi mitochondrial DNA topoisomerase II, putative 0.153 0.0945 0.2597
Trypanosoma cruzi dihydrofolate reductase-thymidylate synthase 0.5448 0.3633 1
Trypanosoma cruzi DNA topoisomerase II, putative 0.153 0.0945 0.2597
Schistosoma mansoni DNA topoisomerase II 0.153 0.0945 0.2602
Plasmodium falciparum DNA topoisomerase 2 0.153 0.0945 0.0943
Plasmodium falciparum bifunctional dihydrofolate reductase-thymidylate synthase 0.5448 0.3633 0.3631
Loa Loa (eye worm) thymidylate synthase 0.5448 0.3633 1
Echinococcus granulosus S adenosylmethionine synthase type 1 0.0155 0.0003 0.0007
Loa Loa (eye worm) hypothetical protein 0.153 0.0945 0.2597
Plasmodium vivax DNA topoisomerase II, putative 0.153 0.0945 0.0943
Trypanosoma cruzi DNA topoisomerase II, putative 0.153 0.0945 0.2597
Loa Loa (eye worm) TOPoisomerase family member 0.153 0.0945 0.2597
Trypanosoma brucei DNA topoisomerase II alpha, putative 0.153 0.0945 0.2597
Toxoplasma gondii bifunctional dihydrofolate reductase-thymidylate synthase 0.5448 0.3633 0.3631
Trypanosoma cruzi mitochondrial DNA topoisomerase II, putative 0.153 0.0945 0.2597
Trypanosoma brucei dihydrofolate reductase-thymidylate synthase 0.5448 0.3633 1
Trypanosoma brucei DNA topoisomerase II beta, putative 0.153 0.0945 0.2597
Toxoplasma gondii DNA gyrase/topoisomerase IV, A subunit domain-containing protein 1.4732 1 1
Leishmania major dihydrofolate reductase-thymidylate synthase 0.5448 0.3633 1
Trichomonas vaginalis conserved hypothetical protein 0.2592 0.1674 1
Giardia lamblia DNA topoisomerase II 0.153 0.0945 1

Activities

Activity type Activity value Assay description Source Reference
ED50 (functional) = 14 mg kg-1 day-1 Antitumor activity against transplanted tumor sarcoma 180 expressed as effective dose. ChEMBL. 2521251

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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