Detailed information for compound 550230

Basic information

Technical information
  • TDR Targets ID: 550230
  • Name: copper; pentasodium; 2-[2-[bis(2-oxido-2-oxo- ethyl)amino]ethyl-(2-oxido-2-oxo-ethyl)amino] acetate; formaldehyde; hydroxide; sulfate
  • MW: 614.841 | Formula: C11H20CuN2Na5O14S
  • H donors: 1 H acceptors: 14 LogP: -4.14 Rotable bonds: 11
    Rule of 5 violations (Lipinski): 3
  • SMILES: [O-]S(=O)(=O)[O-].[O-]C(=O)CN(CC(=O)[O-])CCN(CC(=O)[O-])CC(=O)[O-].C=O.[Cu+2].[OH-].[NaH+].[NaH+].[NaH+].[NaH+].[NaH+]
  • InChi: 1S/C10H16N2O8.CH2O.Cu.5Na.H2O4S.H2O/c13-7(14)3-11(4-8(15)16)1-2-12(5-9(17)18)6-10(19)20;1-2;;;;;;;1-5(2,3)4;/h1-6H2,(H,13,14)(H,15,16)(H,17,18)(H,19,20);1H2;;;;;;;(H2,1,2,3,4);1H2/q;;+2;5*+1;;/p-7
  • InChiKey: KKBICIVIAVHOOL-UHFFFAOYSA-G  


Substructure search Similarity search

Network

Hover on a compound node to display the structore

Synonyms

  • copper; pentasodium; 2-[2-[bis(2-oxido-2-oxoethyl)amino]ethyl-(2-oxido-2-oxoethyl)amino]acetate; formaldehyde; hydroxide; sulfate
  • copper; pentasodium; 2-[2-[bis(2-oxidanidyl-2-oxo-ethyl)amino]ethyl-(2-oxidanidyl-2-oxo-ethyl)amino]ethanoate; methanal; hydroxide; sulfate
  • cupric; pentasodium; 2-[2-[bis(2-keto-2-oxido-ethyl)amino]ethyl-(2-keto-2-oxido-ethyl)amino]acetate; formaldehyde; hydroxide; sulfate
  • copper; pentasodium; 2-[2-[bis(2-oxido-2-oxo-ethyl)amino]ethyl-(2-oxido-2-oxo-ethyl)amino]ethanoate; methanal; hydroxide; sulfate
  • 87731-78-0
  • Glycine, N,N'-1,2-ethanedylbis(N-(carboxymethyl)-, sodium salt, mixt. with copper(2+) sulfate (1:1), formaldehyde and sodium hydroxide (Na(OH))

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Mycobacterium tuberculosis Dihydrofolate reductase DfrA (DHFR) (tetrahydrofolate dehydrogenase) Curated by TDR Targets References
Mycobacterium leprae DIHYDROFOLATE REDUCTASE DFRA (DHFR) (TETRAHYDROFOLATE DEHYDROGENASE) Curated by TDR Targets References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Chlamydia trachomatis dihydrofolate reductase Get druggable targets OG5_128410 All targets in OG5_128410
Mycobacterium tuberculosis Dihydrofolate reductase DfrA (DHFR) (tetrahydrofolate dehydrogenase) Get druggable targets OG5_128410 All targets in OG5_128410
Brugia malayi Dihydrofolate reductase Get druggable targets OG5_128410 All targets in OG5_128410
Candida albicans hypothetical protein Get druggable targets OG5_128410 All targets in OG5_128410
Candida albicans dihydrofolate reductase Get druggable targets OG5_128410 All targets in OG5_128410
Loa Loa (eye worm) dihydrofolate reductase Get druggable targets OG5_128410 All targets in OG5_128410
Brugia malayi dihydrofolate reductase family protein Get druggable targets OG5_128410 All targets in OG5_128410
Echinococcus granulosus dihydrofolate reductase Get druggable targets OG5_128410 All targets in OG5_128410
Echinococcus multilocularis dihydrofolate reductase Get druggable targets OG5_128410 All targets in OG5_128410
Schistosoma japonicum ko:K00287 dihydrofolate reductase [EC1.5.1.3], putative Get druggable targets OG5_128410 All targets in OG5_128410
Schistosoma mansoni dihydrofolate reductase Get druggable targets OG5_128410 All targets in OG5_128410
Mycobacterium ulcerans dihydrofolate reductase DfrA Get druggable targets OG5_128410 All targets in OG5_128410
Mycobacterium leprae DIHYDROFOLATE REDUCTASE DFRA (DHFR) (TETRAHYDROFOLATE DEHYDROGENASE) Get druggable targets OG5_128410 All targets in OG5_128410
Candida albicans dihydrofolate reductase Get druggable targets OG5_128410 All targets in OG5_128410
By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Trypanosoma brucei dihydrofolate reductase-thymidylate synthase Dihydrofolate reductase DfrA (DHFR) (tetrahydrofolate dehydrogenase) 159 aa 140 aa 37.9 %
Trypanosoma brucei dihydrofolate reductase-thymidylate synthase DIHYDROFOLATE REDUCTASE DFRA (DHFR) (TETRAHYDROFOLATE DEHYDROGENASE) 165 aa 143 aa 34.3 %
Obtained from network model

Ranking Plot

Putative Targets List

Species Potential target Raw Global Species
Loa Loa (eye worm) hypothetical protein 0.0033 0.0041 0.0154
Echinococcus granulosus dihydrofolate reductase 0.0415 0.2684 0.2661
Schistosoma mansoni aldehyde dehydrogenase 0.0063 0.0249 0.0218
Brugia malayi ecdysteroid receptor 0.0032 0.0032 0.0118
Mycobacterium tuberculosis Probable fatty-acid-CoA ligase FadD5 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase) 0.0053 0.0177 0.0146
Schistosoma mansoni histone-lysine n-methyltransferase setb1 0.0033 0.0041 0.001
Echinococcus granulosus ATP dependent Clp protease proteolytic subunit 0.0084 0.0392 0.0361
Mycobacterium tuberculosis Probable fatty-acid-CoA ligase FadD3 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase) 0.0053 0.0177 0.0146
Loa Loa (eye worm) hypothetical protein 0.0056 0.0198 0.0737
Toxoplasma gondii histone lysine methyltransferase SET/SUV39 0.0033 0.0041 0.0454
Loa Loa (eye worm) hypothetical protein 0.0056 0.0198 0.0737
Mycobacterium ulcerans ATP-dependent Clp protease proteolytic subunit 0.0084 0.0392 0.099
Toxoplasma gondii ATP-dependent Clp endopeptidase, proteolytic subunit ClpP domain-containing protein 0.0084 0.0392 0.4299
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0045 0.0125 0.0094
Loa Loa (eye worm) hypothetical protein 0.0032 0.0032 0.0118
Plasmodium vivax ATP-dependent Clp protease proteolytic subunit, putative 0.0029 0.0013 0.0141
Echinococcus granulosus aldehyde dehydrogenase mitochondrial 0.0063 0.0249 0.0218
Mycobacterium ulcerans long-chain-fatty-acid--CoA ligase 0.0074 0.0328 0.0739
Brugia malayi steroid hormone receptor 0.0032 0.0032 0.0118
Brugia malayi Steroid receptor seven-up type 2 0.0032 0.0032 0.0118
Mycobacterium tuberculosis Probable aldehyde dehydrogenase 0.0063 0.0249 0.0428
Echinococcus granulosus histone lysine methyltransferase setb 0.0033 0.0041 0.001
Brugia malayi Corticotropin releasing factor receptor 2 precursor, putative 0.0055 0.0194 0.0723
Onchocerca volvulus 0.0168 0.0973 0.5926
Brugia malayi nuclear receptor NHR-88 0.0032 0.0032 0.0118
Onchocerca volvulus Huntingtin homolog 0.0127 0.0691 0.4152
Loa Loa (eye worm) nuclear hormone receptor family member nhr-49 0.0032 0.0032 0.0118
Loa Loa (eye worm) pre-SET domain-containing protein family protein 0.023 0.1401 0.522
Leishmania major phosphopantetheinyl transferase-like protein 0.0047 0.014 0.1535
Toxoplasma gondii ATP-dependent Clp endopeptidase, proteolytic subunit ClpP domain-containing protein 0.0084 0.0392 0.4299
Brugia malayi latrophilin 2 splice variant baaae 0.0038 0.0074 0.0274
Mycobacterium ulcerans dihydrofolate reductase DfrA 0.0415 0.2684 1
Chlamydia trachomatis acylglycerophosphoethanolamine acyltransferase 0.0056 0.0198 0.0228
Loa Loa (eye worm) hypothetical protein 0.0084 0.0392 0.1459
Plasmodium vivax bifunctional dihydrofolate reductase-thymidylate synthase, putative 0.0159 0.0911 1
Echinococcus granulosus guanine nucleotide binding protein Gs subunit 0.0045 0.0125 0.0094
Loa Loa (eye worm) hypothetical protein 0.0032 0.0032 0.0118
Mycobacterium ulcerans hypothetical protein 0.0074 0.0328 0.0739
Trypanosoma cruzi dihydrofolate reductase-thymidylate synthase 0.0159 0.0911 1
Mycobacterium tuberculosis Probable ATP-dependent CLP protease proteolytic subunit 2 ClpP2 (endopeptidase CLP 2) 0.0055 0.0193 0.0207
Leishmania major 4-coumarate:coa ligase-like protein 0.0074 0.0328 0.3598
Schistosoma mansoni hypothetical protein 0.0165 0.0957 0.0928
Loa Loa (eye worm) nuclear Hormone Receptor family member 0.0032 0.0032 0.0118
Brugia malayi photoreceptor-specific nuclear receptor 0.0032 0.0032 0.0118
Toxoplasma gondii hypothetical protein 0.0029 0.0013 0.0141
Echinococcus multilocularis dihydrofolate reductase 0.0415 0.2684 0.2661
Loa Loa (eye worm) hypothetical protein 0.0032 0.0032 0.0118
Mycobacterium leprae PROBABLE FATTY-ACID-CoA LIGASE FADD7 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 0.0074 0.0328 0.1179
Brugia malayi AMP-binding enzyme family protein 0.0074 0.0328 0.1221
Brugia malayi dihydrofolate reductase family protein 0.0415 0.2684 1
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0045 0.0125 0.0094
Echinococcus multilocularis geminin 0.0165 0.0957 0.0928
Leishmania major dihydrofolate reductase-thymidylate synthase 0.0159 0.0911 1
Loa Loa (eye worm) nuclear hormone receptor family member nhr-1 0.0032 0.0032 0.0118
Mycobacterium tuberculosis Probable chain -fatty-acid-CoA ligase FadD13 (fatty-acyl-CoA synthetase) 0.0074 0.0328 0.0739
Mycobacterium ulcerans acyl-CoA synthetase 0.0074 0.0328 0.0739
Brugia malayi hypothetical protein 0.0127 0.0691 0.2576
Mycobacterium ulcerans acyl-CoA synthetase 0.0074 0.0328 0.0739
Leishmania major 4-coumarate:coa ligase-like protein 0.0074 0.0328 0.3598
Brugia malayi Nuclear hormone receptor family member nhr-31 0.0032 0.0032 0.0118
Mycobacterium leprae DIHYDROFOLATE REDUCTASE DFRA (DHFR) (TETRAHYDROFOLATE DEHYDROGENASE) 0.0415 0.2684 1
Brugia malayi Nuclear hormone receptor family member nhr-25 0.0032 0.0032 0.0118
Loa Loa (eye worm) hypothetical protein 0.0127 0.0691 0.2576
Loa Loa (eye worm) nuclear hormone receptor family member nhr-40 0.0032 0.0032 0.0118
Brugia malayi Calcitonin receptor-like protein seb-1 0.0055 0.0194 0.0723
Loa Loa (eye worm) hypothetical protein 0.0038 0.0074 0.0274
Plasmodium vivax ATP-dependent Clp protease proteolytic subunit, putative 0.0084 0.0392 0.4299
Brugia malayi Nuclear hormone receptor family member nhr-1 0.0032 0.0032 0.0118
Mycobacterium ulcerans long-chain-fatty-acid-CoA ligase 0.0074 0.0328 0.0739
Treponema pallidum ATP-dependent Clp protease proteolytic subunit 0.0084 0.0392 1
Echinococcus multilocularis aldehyde dehydrogenase, mitochondrial 0.0063 0.0249 0.0218
Loa Loa (eye worm) hypothetical protein 0.0032 0.0032 0.0118
Leishmania major 4-coumarate:coa ligase-like protein 0.0074 0.0328 0.3598
Loa Loa (eye worm) GTP-binding regulatory protein Gs alpha-S chain 0.0045 0.0125 0.0467
Mycobacterium leprae PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 CLPP1 (ENDOPEPTIDASE CLP) 0.0055 0.0193 0.0673
Plasmodium falciparum bifunctional dihydrofolate reductase-thymidylate synthase 0.0159 0.0911 1
Plasmodium falciparum acyl-CoA synthetase 0.0056 0.0198 0.2172
Onchocerca volvulus 0.0033 0.0041 0.0061
Brugia malayi GTP-binding regulatory protein Gs alpha-S chain, putative 0.0045 0.0125 0.0467
Schistosoma mansoni peptidase Clp (S14 family) 0.0084 0.0392 0.0361
Mycobacterium ulcerans aldehyde dehydrogenase 0.0063 0.0249 0.0428
Brugia malayi Probable ClpP-like protease 0.0084 0.0392 0.1459
Mycobacterium ulcerans acyl-CoA synthetase 0.0074 0.0328 0.0739
Mycobacterium tuberculosis Probable ATP-dependent CLP protease proteolytic subunit 1 ClpP1 (endopeptidase CLP) 0.0055 0.0193 0.0207
Brugia malayi Nuclear hormone receptor-like 1 0.0032 0.0032 0.0118
Echinococcus multilocularis ATP dependent Clp protease proteolytic subunit 0.0084 0.0392 0.0361
Schistosoma mansoni hypothetical protein 0.0165 0.0957 0.0928
Loa Loa (eye worm) pigment dispersing factor receptor c 0.0055 0.0194 0.0723
Brugia malayi Pre-SET motif family protein 0.0033 0.0041 0.0154
Loa Loa (eye worm) steroid hormone receptor 0.0032 0.0032 0.0118
Wolbachia endosymbiont of Brugia malayi ATP-dependent Clp protease proteolytic subunit 0.0084 0.0392 1
Mycobacterium leprae conserved hypothetical protein 0.0047 0.014 0.0475
Trichomonas vaginalis set domain proteins, putative 0.0261 0.1621 0.5
Echinococcus multilocularis microtubule associated protein 2 0.1473 1 1
Brugia malayi Nuclear hormone receptor family member nhr-49 0.0032 0.0032 0.0118
Loa Loa (eye worm) hypothetical protein 0.0056 0.0198 0.0737
Trypanosoma brucei hypothetical protein, conserved 0.0047 0.014 0.1535
Entamoeba histolytica acyl-coA synthetase, putative 0.0074 0.0328 1
Plasmodium falciparum holo-[acyl-carrier-protein] synthase, putative 0.0047 0.014 0.1535
Brugia malayi Dihydrofolate reductase 0.0415 0.2684 1
Mycobacterium tuberculosis Fatty-acid-AMP ligase FadD30 (fatty-acid-AMP synthetase) (fatty-acid-AMP synthase) 0.0056 0.0198 0.0228
Echinococcus granulosus guanine nucleotide binding protein Gs subunit 0.0045 0.0125 0.0094
Plasmodium vivax SET domain protein, putative 0.0033 0.0041 0.0454
Schistosoma mansoni hypothetical protein 0.0038 0.0074 0.0042
Toxoplasma gondii aldehyde dehydrogenase 0.0063 0.0249 0.2729
Brugia malayi Ligand-binding domain of nuclear hormone receptor family protein 0.0032 0.0032 0.0118
Loa Loa (eye worm) hypothetical protein 0.0074 0.0328 0.1221
Mycobacterium leprae PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 2 CLPP2 (ENDOPEPTIDASE CLP 2) 0.0084 0.0392 0.1418
Mycobacterium ulcerans aldehyde dehydrogenase 0.0063 0.0249 0.0428
Mycobacterium tuberculosis Dihydrofolate reductase DfrA (DHFR) (tetrahydrofolate dehydrogenase) 0.0415 0.2684 1
Brugia malayi Pre-SET motif family protein 0.023 0.1401 0.522
Mycobacterium tuberculosis Probable fatty-acid-CoA ligase FadD35 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase) 0.0053 0.0177 0.0146
Loa Loa (eye worm) hypothetical protein 0.0168 0.0973 0.3626
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit 0.0045 0.0125 0.0094
Schistosoma mansoni histone-lysine n-methyltransferase setb1 0.0033 0.0041 0.001
Loa Loa (eye worm) hypothetical protein 0.0074 0.0328 0.1221
Brugia malayi Nuclear hormone receptor family member nhr-19 0.0032 0.0032 0.0118
Loa Loa (eye worm) hypothetical protein 0.0032 0.0032 0.0118
Mycobacterium ulcerans fatty-acid-CoA ligase 0.0074 0.0328 0.0739
Echinococcus granulosus geminin 0.0165 0.0957 0.0928
Trypanosoma brucei dihydrofolate reductase-thymidylate synthase 0.0159 0.0911 1
Brugia malayi Nuclear hormone receptor family member nhr-14 0.0032 0.0032 0.0118
Mycobacterium ulcerans ATP-dependent Clp protease proteolytic subunit 0.0084 0.0392 0.099
Loa Loa (eye worm) hypothetical protein 0.0055 0.0194 0.0723
Chlamydia trachomatis dihydrofolate reductase 0.0415 0.2684 1
Brugia malayi nuclear hormone receptor 0.0032 0.0032 0.0118
Schistosoma mansoni aldehyde dehydrogenase 0.0063 0.0249 0.0218
Brugia malayi Nuclear hormone receptor family member nhr-41 0.0032 0.0032 0.0118
Brugia malayi aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 0.0168 0.0973 0.3626
Loa Loa (eye worm) hypothetical protein 0.0056 0.0198 0.0737
Echinococcus granulosus peptidase Clp S14 family 0.0055 0.0193 0.0161
Schistosoma mansoni microtubule-associated protein tau 0.1473 1 1
Loa Loa (eye worm) hypothetical protein 0.0074 0.0328 0.1221
Brugia malayi Nuclear hormone receptor family member nhr-19 0.0032 0.0032 0.0118
Loa Loa (eye worm) hypothetical protein 0.0056 0.0198 0.0737
Brugia malayi Ligand-binding domain of nuclear hormone receptor family protein 0.0032 0.0032 0.0118
Echinococcus multilocularis histone lysine N methyltransferase SETMAR 0.0033 0.0041 0.001
Echinococcus granulosus L aminoadipate semialdehyde 0.0168 0.0973 0.0945
Echinococcus multilocularis peptidase Clp (S14 family) 0.0055 0.0193 0.0161
Schistosoma mansoni histone-lysine n-methyltransferase setb1 0.0033 0.0041 0.001
Echinococcus multilocularis histone lysine methyltransferase setb histone lysine methyltransferase eggless 0.0033 0.0041 0.001
Loa Loa (eye worm) nuclear hormone receptor family member nhr-14 0.0032 0.0032 0.0118
Brugia malayi Nuclear hormone receptor family member nhr-25 0.0032 0.0032 0.0118
Schistosoma mansoni aminoadipate-semialdehyde dehydrogenase 0.0168 0.0973 0.0945
Loa Loa (eye worm) hypothetical protein 0.0032 0.0032 0.0118
Entamoeba histolytica acyl-CoA synthetase, putative 0.0074 0.0328 1
Mycobacterium ulcerans long-chain fatty-acid CoA ligase 0.0074 0.0328 0.0739
Leishmania major aldehyde dehydrogenase, mitochondrial precursor 0.0063 0.0249 0.2729
Plasmodium vivax holo-[acyl-carrier-protein] synthase, putative 0.0047 0.014 0.1535
Mycobacterium tuberculosis Probable fatty-acid-CoA ligase FadD7 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase) 0.0053 0.0177 0.0146
Brugia malayi AMP-binding enzyme family protein 0.0074 0.0328 0.1221
Loa Loa (eye worm) hypothetical protein 0.0032 0.0032 0.0118
Echinococcus multilocularis guanine nucleotide binding protein G(s) subunit 0.0045 0.0125 0.0094
Chlamydia trachomatis ATP-dependent Clp protease proteolytic subunit 0.0084 0.0392 0.099
Brugia malayi AMP-binding enzyme family protein 0.0074 0.0328 0.1221
Mycobacterium tuberculosis Probable fatty-acid-CoA ligase FadD2 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase) 0.0074 0.0328 0.0739
Treponema pallidum 4'-phosphopantetheinyl transferase 0.0047 0.014 0.3352
Mycobacterium ulcerans fatty-acid-CoA ligase 0.0056 0.0198 0.0228
Loa Loa (eye worm) hypothetical protein 0.0127 0.0691 0.2576
Echinococcus multilocularis L aminoadipate semialdehyde 0.0168 0.0973 0.0945
Onchocerca volvulus 0.0074 0.0328 0.1864
Loa Loa (eye worm) dihydrofolate reductase 0.0415 0.2684 1
Echinococcus granulosus 5'partial|histone lysine N methyltransferase SETDB2 0.0032 0.0033 0.0001
Toxoplasma gondii 4'-phosphopantetheinyl transferase domain-containing protein 0.0047 0.014 0.1535
Loa Loa (eye worm) nuclear hormone receptor family member nhr-31 0.0032 0.0032 0.0118
Schistosoma mansoni dihydrofolate reductase 0.0415 0.2684 0.2661
Toxoplasma gondii 4'-phosphopantetheinyl transferase superfamily protein 0.0047 0.014 0.1535
Schistosoma mansoni Guanine nucleotide-binding protein G(s) subunit alpha (Adenylate cyclase-stimulating G alpha protein) 0.0045 0.0125 0.0094
Plasmodium falciparum ATP-dependent Clp protease proteolytic subunit 0.0084 0.0392 0.4299
Mycobacterium ulcerans aldehyde dehydrogenase 0.0063 0.0249 0.0428
Chlamydia trachomatis ATP-dependent Clp protease proteolytic subunit 0.0084 0.0392 0.099
Onchocerca volvulus 0.0261 0.1621 1
Loa Loa (eye worm) hypothetical protein 0.0032 0.0032 0.0118
Mycobacterium leprae PROBABLE FATTY-ACID-CoA LIGASE FADD2 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 0.0074 0.0328 0.1179
Schistosoma mansoni histone-lysine n-methyltransferase suv9 0.0033 0.0041 0.001
Entamoeba histolytica acyl-CoA synthetase, putative 0.0074 0.0328 1
Onchocerca volvulus Huntingtin homolog 0.0127 0.0691 0.4152
Plasmodium falciparum ATP-dependent Clp protease proteolytic subunit 0.0029 0.0013 0.0141
Brugia malayi Nuclear hormone receptor family member nhr-3 0.0032 0.0032 0.0118
Brugia malayi Nuclear hormone receptor family member nhr-40 0.0032 0.0032 0.0118
Plasmodium vivax acyl-CoA synthetase, putative 0.0056 0.0198 0.2172
Toxoplasma gondii bifunctional dihydrofolate reductase-thymidylate synthase 0.0159 0.0911 1
Loa Loa (eye worm) nuclear hormone receptor family member nhr-41 0.0032 0.0032 0.0118

Activities

No activities found for this compound.

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

Affected Entity Phenotypic quality Occurs in Occurs at Evidence Observed in Targets
catalytic activity (GO:0003824) decreased (PATO:0000468) in vitro (MI:0492) inferred from specific protein inhibition (ECO:0000020) Mycobacterium avium 256134  
Annotator: crowther@u.washington.edu Comment: 2007-12-27 References: 10579848 10991861 11754594 12467708 12699390 12832132 14998335 15026078 15115391 15214795 15974594 17010625 9554874
growth (GO:0040007) decreased (PATO:0000468) inferred from in vitro culture assay (ECO:0000182) Mycobacterium avium 256134  
Annotator: crowther@u.washington.edu Comment: 2007-12-27 References: 10052907 10991861 14998335 7486934 8913480 9835537
growth (GO:0040007) decreased (PATO:0000468) inferred from in vitro culture assay (ECO:0000182) Mycobacterium tuberculosis 256134  
Annotator: crowther@u.washington.edu Comment: 2007-12-27 References: 10052907 11597474 12384337
growth (GO:0040007) decreased (PATO:0000468) inferred from in vitro culture assay (ECO:0000182) Mycobacterium avium 5868  
Annotator: crowther@u.washington.edu Comment: 2007-12-27 References: 10052907 10991861 14998335 7486934 8913480 9835537
catalytic activity (GO:0003824) decreased (PATO:0000468) in vitro (MI:0492) inferred from specific protein inhibition (ECO:0000020) Mycobacterium avium 5868  
Annotator: crowther@u.washington.edu Comment: 2007-12-27 References: 10579848 10991861 11754594 12467708 12699390 12832132 14998335 15026078 15115391 15214795 15974594 17010625 9554874
growth (GO:0040007) decreased (PATO:0000468) inferred from in vitro culture assay (ECO:0000182) Mycobacterium tuberculosis 5868  
Annotator: crowther@u.washington.edu Comment: 2007-12-27 References: 10052907 11597474 12384337

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

19 literature references were collected for this gene.

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