Detailed information for compound 927941

Basic information

Technical information
  • Name: Unnamed compound
  • MW: 343.337 | Formula: C16H17N5O4
  • H donors: 3 H acceptors: 5 LogP: 0.51 Rotable bonds: 9
    Rule of 5 violations (Lipinski): 1
  • SMILES: CCNC(=O)Nc1ccc(cn1)C(=O)Nc1nccc(c1)C(=O)OC
  • InChi: 1S/C16H17N5O4/c1-3-17-16(24)21-12-5-4-11(9-19-12)14(22)20-13-8-10(6-7-18-13)15(23)25-2/h4-9H,3H2,1-2H3,(H,18,20,22)(H2,17,19,21,24)
  • InChiKey: PFEBZZSWMOFVHT-UHFFFAOYSA-N  

Network

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Synonyms

No synonyms found for this compound

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Escherichia coli DNA gyrase (type II topoisomerase), subunit A References
Escherichia coli DNA gyrase, subunit B References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Plasmodium falciparum DNA gyrase subunit A Get druggable targets OG5_129568 All targets in OG5_129568
Babesia bovis DNA gyrase A subunit, putative Get druggable targets OG5_129568 All targets in OG5_129568
Trypanosoma brucei gambiense DNA topoisomerase II, putative Get druggable targets OG5_128755 All targets in OG5_128755
Wolbachia endosymbiont of Brugia malayi DNA gyrase, topoisomerase II, B subunit, GyrB Get druggable targets OG5_128755 All targets in OG5_128755
Plasmodium berghei DNA gyrase subunit A, putative Get druggable targets OG5_129568 All targets in OG5_129568
Leishmania infantum mitochondrial DNA topoisomerase II Get druggable targets OG5_128755 All targets in OG5_128755
Trypanosoma brucei DNA topoisomerase ii Get druggable targets OG5_128755 All targets in OG5_128755
Wolbachia endosymbiont of Brugia malayi DNA gyrase subunit A Get druggable targets OG5_129568 All targets in OG5_129568
Neospora caninum hypothetical protein Get druggable targets OG5_128755 All targets in OG5_128755
Trypanosoma congolense DNA topoisomerase II, putative Get druggable targets OG5_128755 All targets in OG5_128755
Toxoplasma gondii ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein Get druggable targets OG5_128755 All targets in OG5_128755
Leishmania donovani mitochondrial DNA topoisomerase II Get druggable targets OG5_128755 All targets in OG5_128755
Mycobacterium ulcerans DNA gyrase subunit A Get druggable targets OG5_129568 All targets in OG5_129568
Leishmania braziliensis mitochondrial DNA topoisomerase II Get druggable targets OG5_128755 All targets in OG5_128755
Treponema pallidum DNA gyrase, subunit B (gyrB) Get druggable targets OG5_128755 All targets in OG5_128755
Neospora caninum DNA gyrase subunit A, putative Get druggable targets OG5_129568 All targets in OG5_129568
Theileria parva DNA gyrase subunit B, putative Get druggable targets OG5_128755 All targets in OG5_128755
Mycobacterium leprae Probable DNA gyrase (subunit A) GyrA (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (Type II DNA topoisomerase) Get druggable targets OG5_129568 All targets in OG5_129568
Plasmodium yoelii DNA gyrase subunit a-related Get druggable targets OG5_129568 All targets in OG5_129568
Plasmodium knowlesi DNA gyrase subunit B, putative Get druggable targets OG5_128755 All targets in OG5_128755
Toxoplasma gondii DNA gyrase/topoisomerase IV, A subunit domain-containing protein Get druggable targets OG5_129568 All targets in OG5_129568
Plasmodium knowlesi DNA gyrase subunit A, putative Get druggable targets OG5_129568 All targets in OG5_129568
Mycobacterium tuberculosis DNA gyrase (subunit A) GyrA (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (type II DNA topoisomerase) Get druggable targets OG5_129568 All targets in OG5_129568
Babesia bovis DNA gyrase subunit B, putative Get druggable targets OG5_128755 All targets in OG5_128755
Mycobacterium tuberculosis DNA gyrase (subunit B) GyrB (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (type II DNA topoisomerase) Get druggable targets OG5_128755 All targets in OG5_128755
Mycobacterium leprae Probable DNA gyrase (subunit B) GyrB (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (Type II DNA topoisomerase) Get druggable targets OG5_128755 All targets in OG5_128755
Trypanosoma cruzi mitochondrial DNA topoisomerase II, putative Get druggable targets OG5_128755 All targets in OG5_128755
Plasmodium yoelii DNA topoisomerase II, putative Get druggable targets OG5_128755 All targets in OG5_128755
Plasmodium vivax DNA gyrase subunit B, putative Get druggable targets OG5_128755 All targets in OG5_128755
Trypanosoma cruzi mitochondrial DNA topoisomerase II, putative Get druggable targets OG5_128755 All targets in OG5_128755
Plasmodium berghei DNA gyrase subunit B, putative Get druggable targets OG5_128755 All targets in OG5_128755
Mycobacterium ulcerans DNA gyrase subunit B Get druggable targets OG5_128755 All targets in OG5_128755
Theileria parva DNA gyrase subunit A, putative Get druggable targets OG5_129568 All targets in OG5_129568
Leishmania mexicana mitochondrial DNA topoisomerase II Get druggable targets OG5_128755 All targets in OG5_128755
Plasmodium falciparum DNA gyrase subunit B Get druggable targets OG5_128755 All targets in OG5_128755
Treponema pallidum DNA gyrase, subunit A (gyrA) Get druggable targets OG5_129568 All targets in OG5_129568
Leishmania major mitochondrial DNA topoisomerase II Get druggable targets OG5_128755 All targets in OG5_128755
Chlamydia trachomatis DNA gyrase subunit A Get druggable targets OG5_129568 All targets in OG5_129568
Chlamydia trachomatis DNA gyrase subunit B Get druggable targets OG5_128755 All targets in OG5_128755
Plasmodium vivax DNA gyrase subunit A, putative Get druggable targets OG5_129568 All targets in OG5_129568

By sequence similarity to non orthologous known druggable targets
No druggable targets predicted by sequence similarity

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Leishmania major 0.0473 1 1
Trypanosoma brucei DNA topoisomerase ii 0.0121 0.1636 0.1532
Mycobacterium tuberculosis DNA gyrase (subunit A) GyrA (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (type II DNA topoisomerase) 0.0318 0.6313 1
Onchocerca volvulus DNA topoisomerase 2 homolog 0.0069 0.0383 0.5
Trypanosoma cruzi fructose-1,6-bisphosphatase, cytosolic, putative 0.0473 1 1
Toxoplasma gondii DNA gyrase/topoisomerase IV, A subunit domain-containing protein 0.0318 0.6313 0.6166
Trypanosoma cruzi mitochondrial DNA topoisomerase II, putative 0.0121 0.1636 0.1532
Trypanosoma cruzi mitochondrial DNA topoisomerase II, putative 0.0121 0.1636 0.1532
Chlamydia trachomatis DNA gyrase subunit A 0.0318 0.6313 1
Trypanosoma cruzi sedoheptulose-1,7-bisphosphatase, putative 0.0176 0.2932 0.2844
Plasmodium vivax DNA gyrase subunit A, putative 0.0318 0.6313 1
Chlamydia trachomatis DNA gyrase subunit B 0.0153 0.2386 0.2419
Toxoplasma gondii ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein 0.0088 0.085 0.0486
Toxoplasma gondii sedoheptulose-1,7-bisphosphatase 0.0176 0.2932 0.265
Toxoplasma gondii fructose-bisphospatase II 0.0473 1 1
Onchocerca volvulus DNA topoisomerase 2 homolog 0.0069 0.0383 0.5
Toxoplasma gondii fructose-bisphospatase I 0.0176 0.2932 0.265
Trypanosoma brucei fructose-1,6-bisphosphatase 0.0473 1 1
Entamoeba histolytica DNA topoisomerase II, putative 0.0069 0.0383 0.5
Trichomonas vaginalis DNA topoisomerase II, putative 0.0069 0.0383 0.5
Wolbachia endosymbiont of Brugia malayi DNA gyrase subunit A 0.0318 0.6313 1
Plasmodium falciparum DNA gyrase subunit A 0.0318 0.6313 1
Echinococcus multilocularis fructose 1,6 bisphosphatase 1 0.0473 1 1
Leishmania major mitochondrial DNA topoisomerase II 0.0121 0.1636 0.1532
Echinococcus granulosus fructose 16 bisphosphatase 1 0.0473 1 1
Trypanosoma brucei sedoheptulose-1,7-bisphosphatase 0.0176 0.2932 0.2844
Onchocerca volvulus Putative DNA topoisomerase 2, mitochondrial 0.0069 0.0383 0.5
Loa Loa (eye worm) fructose-1,6-bisphosphatase 0.0473 1 1
Schistosoma mansoni fructose-16-bisphosphatase-related 0.0473 1 1
Plasmodium falciparum DNA gyrase subunit B 0.0153 0.2386 0.3378
Mycobacterium ulcerans DNA gyrase subunit A 0.0318 0.6313 1
Trypanosoma cruzi fructose-1,6-bisphosphatase, cytosolic, putative 0.0473 1 1
Treponema pallidum DNA gyrase, subunit A (gyrA) 0.0318 0.6313 1
Mycobacterium leprae Probable DNA gyrase (subunit A) GyrA (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (Type II DNA topoisomerase) 0.0152 0.2354 1
Trypanosoma cruzi sedoheptulose-1,7-bisphosphatase, putative 0.0176 0.2932 0.2844
Giardia lamblia DNA topoisomerase II 0.0064 0.0269 0.5
Plasmodium vivax DNA gyrase subunit B, putative 0.0153 0.2386 0.3378

Activities

Activity type Activity value Assay description Source Reference
IC50 (binding) = 14 uM Inhibition of Escherichia coli GyrB A2B2 subunits assessed reduction in DNA supercoiling activity by malachite green dye based by spectrophotometry ChEMBL. 25137573

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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