Detailed information for compound 931225

Basic information

Technical information
  • TDR Targets ID: 931225
  • Name: N-[4-[2-[[2-fluoro-5-(trifluoromethyl)phenyl] amino]-1-methylbenzimidazol-5-yl]oxypyridin-2 -yl]-1-propan-2-ylpiperidine-4-carboxamide
  • MW: 570.581 | Formula: C29H30F4N6O2
  • H donors: 2 H acceptors: 3 LogP: 5.56 Rotable bonds: 9
    Rule of 5 violations (Lipinski): 2
  • SMILES: CC(N1CCC(CC1)C(=O)Nc1nccc(c1)Oc1ccc2c(c1)nc(n2C)Nc1cc(ccc1F)C(F)(F)F)C
  • InChi: 1S/C29H30F4N6O2/c1-17(2)39-12-9-18(10-13-39)27(40)37-26-16-21(8-11-34-26)41-20-5-7-25-24(15-20)36-28(38(25)3)35-23-14-19(29(31,32)33)4-6-22(23)30/h4-8,11,14-18H,9-10,12-13H2,1-3H3,(H,35,36)(H,34,37,40)
  • InChiKey: NLHOWBQQPCBEPZ-UHFFFAOYSA-N  


Substructure search Similarity search

Network

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Synonyms

  • N-[4-[2-[[2-fluoro-5-(trifluoromethyl)phenyl]amino]-1-methyl-benzimidazol-5-yl]oxy-2-pyridyl]-1-isopropyl-piperidine-4-carboxamide
  • N-[4-[[2-[[2-fluoro-5-(trifluoromethyl)phenyl]amino]-1-methyl-5-benzimidazolyl]oxy]-2-pyridyl]-1-isopropyl-4-piperidinecarboxamide
  • N-[4-[2-[[2-fluoro-5-(trifluoromethyl)phenyl]amino]-1-methyl-benzimidazol-5-yl]oxy-2-pyridyl]-1-isopropyl-isonipecotamide
  • N-[4-[2-[[2-fluoro-5-(trifluoromethyl)phenyl]amino]-1-methyl-benzimidazol-5-yl]oxypyridin-2-yl]-1-propan-2-yl-piperidine-4-carboxamide

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Homo sapiens B-Raf proto-oncogene, serine/threonine kinase Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Brugia malayi Raf kinase Get druggable targets OG5_130459 All targets in OG5_130459
Schistosoma mansoni serine/threonine protein kinase Get druggable targets OG5_130459 All targets in OG5_130459
Loa Loa (eye worm) TKL/RAF/RAF protein kinase Get druggable targets OG5_130459 All targets in OG5_130459
Schistosoma japonicum ko:K04365 B-Raf proto-oncogene serine/threonine-protein kinase, putative Get druggable targets OG5_130459 All targets in OG5_130459
Echinococcus granulosus raf serine:threonine protein kinase Get druggable targets OG5_130459 All targets in OG5_130459
Loa Loa (eye worm) raf kinase Get druggable targets OG5_130459 All targets in OG5_130459
Echinococcus multilocularis raf serine:threonine protein kinase Get druggable targets OG5_130459 All targets in OG5_130459
By sequence similarity to non orthologous known druggable targets
No druggable targets predicted by sequence similarity
Obtained from network model

Ranking Plot

Putative Targets List

Species Potential target Raw Global Species
Entamoeba histolytica hypothetical protein, conserved 0.0632 1 0.5
Leishmania major PIF1 helicase-like protein, putative,DNA repair and recombination protein, mitochondrial precursor, putative 0.0632 1 0.5
Brugia malayi Raf kinase 0.0253 0.2152 0.5
Trypanosoma cruzi DNA repair and recombination helicase protein PIF7, putative 0.0632 1 0.5
Trypanosoma brucei DNA repair and recombination helicase protein PIF7 0.0632 1 0.5
Loa Loa (eye worm) raf kinase 0.026 0.2314 1
Leishmania major PIF1 helicase-like protein, putative,DNA repair and recombination protein, mitochondrial precursor, putative 0.0632 1 0.5
Trichomonas vaginalis conserved hypothetical protein 0.0632 1 0.5
Schistosoma mansoni hypothetical protein 0.0632 1 1
Trypanosoma brucei DNA repair and recombination helicase protein PIF6 0.0632 1 0.5
Giardia lamblia Rrm3p helicase 0.0632 1 0.5
Echinococcus multilocularis ATP dependent DNA helicase PIF1 0.0632 1 1
Entamoeba histolytica DNA repair and recombination protein, putative 0.0632 1 0.5
Trypanosoma cruzi DNA repair and recombination helicase protein PIF7, putative 0.0632 1 0.5
Trypanosoma cruzi DNA repair and recombination helicase protein PIF6, putative 0.0632 1 0.5

Activities

Activity type Activity value Assay description Source Reference
EC50 (binding) = 0.1 uM Inhibition of BRAF (unknown origin)-mediated ERK phosphorylation by cell-based assay ChEMBL. 25221654
IC50 (binding) = 0.002 uM Inhibition of BRAF V600E mutant (unknown origin) ChEMBL. 25221654
Stabilty (ADMET) = 52 % Stability in mouse plasma assessed as compound remaining at 1 uM at 37 degC after 45 mins ChEMBL. 25221654

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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