Detailed view for Tb927.5.3950

Basic information

TDR Targets ID: 17085
Trypanosoma brucei, 2OG-Fe(II) oxygenase superfamily, putative
Source Database / ID:  TriTrypDB  GeneDB

pI: 4.6938 | Length (AA): 318 | MW (Da): 35598 | Paralog Number: 0

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0

Druggability Group : DG4

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF13640   2OG-Fe(II) oxygenase superfamily

Gene Ontology

Mouse over links to read term descriptions.
GO:0016705   oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  
GO:0031418   L-ascorbic acid binding  
GO:0016491   oxidoreductase activity  
GO:0005506   iron ion binding  
GO:0055114   oxidation reduction  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

No model available for this protein in Modbase.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 80-100% percentile Procyclic. Siegel TN
Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile Bloodstream Form. Siegel TN
Show/Hide expression data references
  • Siegel TN Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites.

Orthologs

Ortholog group members (OG5_132302)

Species Accession Gene Product
Cryptosporidium hominis Chro.30242   gene_id:MJM18.3
Cryptosporidium parvum cgd3_2050   putative prolyl 4-hydroxylase alpha subunit homolog, 2-oxoglutarate-dependent dioxygenase
Dictyostelium discoideum DDB_G0284409   hypothetical protein
Dictyostelium discoideum DDB_G0287671   hypothetical protein
Dictyostelium discoideum DDB_G0281783   hypothetical protein
Dictyostelium discoideum DDB_G0285501   hypothetical protein
Leishmania braziliensis LbrM.16.0050   hypothetical protein, conserved
Leishmania donovani LdBPK_160050.1   2OG-Fe(II) oxygenase superfamily, putative
Leishmania infantum LinJ.16.0050   hypothetical protein, conserved
Leishmania major LmjF.16.0040   hypothetical protein, conserved
Leishmania mexicana LmxM.16.0040   hypothetical protein, conserved
Neospora caninum NCLIV_063140   hypothetical protein, conserved
Trypanosoma brucei gambiense Tbg972.5.5460   hypothetical protein, conserved
Trypanosoma brucei Tb927.5.3950   2OG-Fe(II) oxygenase superfamily, putative
Trypanosoma congolense TcIL3000_5_4490   hypothetical protein, conserved
Trypanosoma cruzi TcCLB.507057.40   2OG-Fe(II) oxygenase superfamily, putative
Trypanosoma cruzi TcCLB.506947.70   2OG-Fe(II) oxygenase superfamily, putative
Toxoplasma gondii TGME49_246120   tetratricopeptide repeat-containing protein

Essentiality

Tb927.5.3950 has direct evidence of essentiality
Gene/Ortholog Organism Phenotype Source Study
Tb927.5.3950 this record Trypanosoma brucei significant gain of fitness in bloodstream forms (3 days) alsford
Tb927.5.3950 this record Trypanosoma brucei significant gain of fitness in bloodstream forms (6 days) alsford
Tb927.5.3950 this record Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb927.5.3950 this record Trypanosoma brucei significant gain of fitness in differentiation of procyclic to bloodstream forms alsford
TGME49_246120 Toxoplasma gondii Probably non-essential sidik
Show/Hide essentiality data references
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan

Phenotypes and Validation (curated)

Annotated phenotypes:

Affected Entity Phenotypic quality Occurs in Occurs at Evidence Observed in Drugs/Inhibitors
cell proliferation (GO:0008283) increased (PATO:0000470) bloodstream stage trypomastigotes (PLO:0027) inferred from RNAi experiment (ECO:0000019) No drug identifiers listed for this gene.
Annotator: fernan@iib.unsam.edu.ar. Comment: increased cell proliferation (significant gain of fitness) in bloodstream forms (stage 6 days). References: 21363968
cell proliferation (GO:0008283) normal (PATO:0000461) procyclic (PLO:0034) inferred from RNAi experiment (ECO:0000019) No drug identifiers listed for this gene.
Annotator: fernan@iib.unsam.edu.ar. Comment: normal cell proliferation (no significant loss or gain of fitness) in procyclic forms . References: 21363968
cell proliferation (GO:0008283) increased (PATO:0000470) procyclic (PLO:0034) inferred from RNAi experiment (ECO:0000019) No drug identifiers listed for this gene.
Annotator: fernan@iib.unsam.edu.ar. Comment: increased cell proliferation (significant gain of fitness) in differentiation of procyclic to bloodstream forms . References: 21363968

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0068 0.5 0.5
0.0068 1 1
0.0151288 0.5 0.5
0.0026 1 0.5
0.0089 1 1
0.0042 0.5 0.5
0.0044 0.5 0.5
0.0089 1 1

Assayability

Assay information

No assay information for this target.

Reagent availability

  • Tbru015992AAA;
  • Type Source Notes
    soluble recombinant protein Structural Genomics for Pathogenic Protozoa (SGPP) Tbru015992; Recombinant protein: full-length; Source: T brucei; hypothetical protein, conserved ;

Bibliographic References

1 literature reference was collected for this gene.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

No user comments are available for this gene. Log in to add comments, or register.

Enter your comment

User ()
Gene identifier Tb927.5.3950 (Trypanosoma brucei), 2OG-Fe(II) oxygenase superfamily, putative
Title for this comment
Comment