Detailed view for LmjF.30.0890

Basic information

TDR Targets ID: 20825
Leishmania major, adenosine kinase-like protein
Source Database / ID:  TriTrypDB  GeneDB

pI: 5.3508 | Length (AA): 276 | MW (Da): 29373 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00294   pfkB family carbohydrate kinase

Gene Ontology

Mouse over links to read term descriptions.
GO:0004001   adenosine kinase activity  
GO:0006166   purine ribonucleoside salvage  

Metabolic Pathways

Purine metabolism (KEGG)
Global map (KEGG)

Structural information

Modbase 3D models:

There are 6 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
2 276 1vm7 (A) 59 298 18.00 0 1 1.07 -0.17
2 270 1bx4 (A) 86 344 21.00 0 1 1.26 -0.23
2 260 2a9y (A) 90 352 25.00 0 1 1.11111 0.58
2 273 4xda (A) 57 304 24.00 0.94 1 1.04721 0.91
2 260 3otx (A) 86 333 29.00 0 1 1.22111 0.44
191 236 3jul (A) 210 262 48.00 0.19 0.58 0.279367 1.78

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 80-100% percentile metacyclic. Fernandes MC
Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile amastigotes. Fernandes MC
Show/Hide expression data references
  • Fernandes MC Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures.

Orthologs

Ortholog group members (OG5_204228)

Species Accession Gene Product
Leishmania donovani LdBPK_300950.1   adenosine kinase-like protein
Leishmania major LmjF.30.0890   adenosine kinase-like protein
Leishmania mexicana LmxM.29.0890   adenosine kinase-like protein

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

  • BRENDA Assay
  • An enzyme with this EC number or name or sequence has been assayed in Leishmania donovani ( 3 )

Reagent availability

  • Reagent:
  • Target Type Source Notes
    LmjF.30.0890 cloned gene BRENDA A gene with this EC number or name or sequence has been cloned from Leishmania donovani ( 2 )

Bibliographic References

17 literature references were collected for this gene.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier LmjF.30.0890 (Leishmania major), adenosine kinase-like protein
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