Detailed view for Bm1_12230

Basic information

TDR Targets ID: 235878
Brugia malayi, Protein kinase domain containing protein
Source Database / ID:  GenBank

pI: 10.1704 | Length (AA): 1106 | MW (Da): 129129 | Paralog Number: 0

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0005524   ATP binding  
GO:0004713   protein tyrosine kinase activity  
GO:0004674   protein serine/threonine kinase activity  
GO:0004672   protein kinase activity  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 7 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
6 360 5lm2 (B) 23 342 14.00 0 0.09 0.230976 -0.02
438 594 4mh6 (A) 0 148 10.00 0 0.01 0.392953 -2.51
584 1059 2fo0 (A) 67 529 16.00 0.00000000024 1 0.48128 0.91
717 1103 3kvw (A) 79 462 29.00 0 1 0.61981 0.12
766 1025 4ylk (A) 138 397 36.00 0 1 0.702881 -0.44
768 1105 4iir (A) 668 1005 67.00 0 1 1.10441 -0.85
896 1009 3vut (A) 209 326 42.00 0.012 0.34 -0.0191259 2.1

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_128795)

Species Accession Gene Product
Arabidopsis thaliana AT1G13350   Protein kinase superfamily protein
Arabidopsis thaliana AT3G53640   protein kinase family protein
Arabidopsis thaliana AT3G25840   serine/threonine-protein kinase PRP4
Babesia bovis BBOV_IV004470   serine/threonine-protein kinase, putative
Brugia malayi Bm1_12230   Protein kinase domain containing protein
Caenorhabditis elegans CELE_F22D6.5   Protein PRPF-4, isoform B
Cryptosporidium hominis Chro.80590   hypothetical protein
Cryptosporidium parvum cgd8_5180   hypothetical protein
Dictyostelium discoideum DDB_G0279703   DYRK family protein kinase
Drosophila melanogaster Dmel_CG7028   CG7028 gene product from transcript CG7028-RE
Echinococcus granulosus EgrG_000670000   Serine:threonine protein kinase PRP4
Entamoeba histolytica EHI_087600   protein kinase, putative
Echinococcus multilocularis EmuJ_000670000   Serine:threonine protein kinase PRP4
Homo sapiens ENSG00000112739   pre-mRNA processing factor 4B
Loa Loa (eye worm) LOAG_10875   CMGC/DYRK/PRP4 protein kinase
Mus musculus ENSMUSG00000021413   PRP4 pre-mRNA processing factor 4 homolog B (yeast)
Neospora caninum NCLIV_056510   Homeodomain interacting protein kinase 3, related
Oryza sativa 9269410   Os03g0710100
Oryza sativa 4352925   Os12g0640800
Plasmodium berghei PBANKA_0933000   serine/threonine protein kinase, putative
Plasmodium falciparum PF3D7_1114700   serine/threonine protein kinase, putative
Plasmodium knowlesi PKNH_0912200   protein kinase, putative
Plasmodium vivax PVX_091375   serine/threonine-protein kinase PRP4K, putative
Plasmodium yoelii PY02926   serine/threonine-protein kinase prp4 homolog
Schistosoma japonicum Sjp_0066800   ko:K08827 pre-mRNA-processing factor 4, putative
Schistosoma mansoni Smp_068960.2   serine/threonine protein kinase
Schistosoma mansoni Smp_068960.1   serine/threonine protein kinase
Schmidtea mediterranea mk4.000114.17   Serine/threonine kinase
Schmidtea mediterranea mk4.000114.16   Serine/threonine kinase
Toxoplasma gondii TGME49_313180   cell-cycle-associated protein kinase PRP4, putative
Theileria parva TP01_0303   hypothetical protein
Trichomonas vaginalis TVAG_075270   CMGC family protein kinase

Essentiality

Bm1_12230 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
CELE_F22D6.5 Caenorhabditis elegans embryonic lethal wormbase
CELE_F22D6.5 Caenorhabditis elegans larval arrest wormbase
CELE_F22D6.5 Caenorhabditis elegans slow growth wormbase
CELE_F22D6.5 Caenorhabditis elegans sterile wormbase
PBANKA_0933000 Plasmodium berghei Essential plasmo
TGME49_313180 Toxoplasma gondii Probably essential sidik
Show/Hide essentiality data references
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Homo sapiens pre-mRNA processing factor 4B Compounds References
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Xenopus laevis Aurora kinase B-B 368 aa 25.8% 314 aa Compounds References
Homo sapiens Cyclin-dependent kinase 1/cyclin B1 297 aa 29.2% 325 aa Compounds References
Rattus norvegicus Cell division protein kinase 5 292 aa 29.4% 238 aa Compounds References
Rattus norvegicus Mitogen-activated protein kinase 8 411 aa 27.9% 340 aa Compounds References
Rattus norvegicus MAP kinase p38 alpha 360 aa 26.5% 324 aa Compounds References
Patiria pectinifera Cdc2 300 aa 26.9% 320 aa Compounds References
Rattus norvegicus Mitogen-activated protein kinase 1 358 aa 28.7% 342 aa Compounds References
Plasmodium falciparum (isolate 3D7) Cell division control protein 2 homolog 288 aa 27.2% 316 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0016 0.5 0.5
0.0059 1 1
0.0032 0.5 0.5
0.0007 0.5 0.5
0.0033 0.5 0.5
0.0007 0.5 0.5
0.0012 0.5 0.5
0.0064 0.3377 0.3377
0.0059 1 1
0.0023 0.5 0.5
0.0011 1 1
0.0029 0.5 0.5
0.0093 0.8828 0
0.0018 0.5 0.5
0.0037 1 0.5
0.0062 0.6935 0.7231
0.0056 1 1
0.0088 0.4477 0.4477
0.0063 1 1
0.0016 0.5 0.5
0.0012 0.5 0.5
0.0098 0.3242 0.2614
0.0004 0.5 0.5
0.0059 1 1
0.0081 0.5 0.5
0.0067 0.5 0.5
0.0042 0.5 0.5
0.0039 0.5 0.5
0.0081 1 1
0.0066 0.3101 0
0.0008 0.5 0.5
0.0022 0.5 0.5
0.0036 0.5 0.5
0.0033 1 1
0.0039 0.9485 1
0.0039 0.5 0.5
0.0063 0.7244 0
0.0061 0.6883 0.6808
0.0003 0.5 0.5
0.0092 1 1
0.0007 0.5 0.5
0.0026 0.5 0.5
0.0091 1 1
0.0032 0.5 0.5
0.0027 1 1
0.0012 0.5 0.5
0.0069 0.3067 0.9179

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

1 literature reference was collected for this gene.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

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Gene identifier Bm1_12230 (Brugia malayi), Protein kinase domain containing protein
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