Detailed view for Bm1_40565

Basic information

TDR Targets ID: 239800
Brugia malayi, nuclear hormone receptor

Source Database / ID:  GenBank

pI: 8.4176 | Length (AA): 555 | MW (Da): 63274 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG3

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00105   Zinc finger, C4 type (two domains)

Gene Ontology

Mouse over links to read term descriptions.
GO:0006355   regulation of transcription, DNA-dependent  
GO:0005634   nucleus  
GO:0003677   DNA binding  
GO:0043565   sequence-specific DNA binding  
GO:0008270   zinc ion binding  
GO:0004879   ligand-dependent nuclear receptor activity  
GO:0003707   steroid hormone receptor activity  
GO:0003700   transcription factor activity  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 6 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
2 160 4k35 (A) 31 190 9.00 0 0.02 0.341886 -0.09
151 511 4nqa (B) 76 458 21.00 0 1 0.88885 0.11
161 232 2nll (B) 302 375 60.00 0 1 0.89143 -0.91
161 236 1a6y (A) 100 175 75.00 0 1 1.04264 -0.75
268 511 1fcy (A) 182 417 25.00 0 1 0.90504 -1.76
490 555 3a5z (A) 115 187 35.00 0.73 0.03 0.277619 0.85

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_131607)

Species Accession Gene Product
Brugia malayi Bm1_40565   nuclear hormone receptor
Caenorhabditis elegans CELE_F44A6.2   Protein SEX-1
Homo sapiens ENSG00000172819   retinoic acid receptor, gamma
Homo sapiens ENSG00000077092   retinoic acid receptor, beta
Homo sapiens ENSG00000131759   retinoic acid receptor, alpha
Loa Loa (eye worm) LOAG_02975   nuclear receptor nhr-7B
Loa Loa (eye worm) LOAG_02976   hypothetical protein
Mus musculus ENSMUSG00000001288   retinoic acid receptor, gamma
Mus musculus ENSMUSG00000017491   retinoic acid receptor, beta
Mus musculus ENSMUSG00000037992   retinoic acid receptor, alpha
Onchocerca volvulus OVOC5276   Steroid hormone receptor family member cnr14 homolog

Essentiality

Bm1_40565 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
CELE_F44A6.2 Caenorhabditis elegans embryonic lethal wormbase
CELE_F44A6.2 Caenorhabditis elegans larval arrest wormbase
CELE_F44A6.2 Caenorhabditis elegans larval lethal wormbase
CELE_F44A6.2 Caenorhabditis elegans sterile wormbase
Show/Hide essentiality data references
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.


Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Rattus norvegicus Retinoic acid receptor alpha Compounds References
Rattus norvegicus Retinoic acid receptor gamma Compounds References
Homo sapiens retinoic acid receptor, gamma Compounds References
Mus musculus retinoic acid receptor, beta Compounds References
Mus musculus retinoic acid receptor, alpha Compounds References
Homo sapiens retinoic acid receptor, beta Compounds References
Homo sapiens retinoic acid receptor, alpha Compounds References
Mus musculus retinoic acid receptor, gamma Compounds References
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Canis lupus familiaris Peroxisome proliferator-activated receptor alpha 468 aa 30.4% 381 aa Compounds References
Sus scrofa Vitamin D3 receptor 427 aa 23.8% 383 aa Compounds References
Rattus norvegicus Nuclear receptor subfamily 1 group I member 2 431 aa 26.4% 394 aa Compounds References
Rattus norvegicus Thyroid hormone receptor beta-1 461 aa 26.7% 405 aa Compounds References
Gallus gallus Vitamin D receptor 451 aa 23.2% 401 aa Compounds References
Rattus norvegicus Vitamin D receptor 423 aa 23.4% 381 aa Compounds References
Danio rerio Vitamin D3 receptor A 453 aa 24.8% 415 aa Compounds References
Canis familiaris Peroxisome proliferator-activated receptor delta 441 aa 32.1% 355 aa Compounds References
Nezara viridula Ecdysone receptor 444 aa 25.8% 391 aa Compounds References
Anthonomus grandis Ecdysone receptor 384 aa 27.4% 351 aa Compounds References

Obtained from network model

Ranking Plot


Putative Drugs List


Compound Raw Global Species
0.2201 0.9418 1
0.081 0.3203 0.4671
0.0802 0.9482 1
0.0248 0.3571 0.4474
0.343 0.9097 1
0.1377 0.5772 1
0.069 0.9556 1
0.1828 0.9749 1
0.7844 0.4522 1
0.0066 0.3696 0.3696
0.0778 0.3055 1
0.0214 0.9753 1
0.4071 0.9759 1
0.0034 0.3978 0.3978
0.1513 0.9541 0.5
0.0708 0.8894 1
0.5599 0.9512 1
0.2674 0.9759 1
0.2414 0.928 1
0.3893 0.9744 1
0.0441 0.9749 1
0.6527 0.9749 1
0.0181 0.4441 0.4441
0.0117 0.3171 0.3467
0.4063 0.9724 1
0.0633 0.4672 0.4672
0.2945 0.496 0.9235
0.0787 0.3199 1
0.0787 0.9753 1
0.0787 0.9749 1
0.0117 0.2886 0.4608
0.0475 0.2534 0.3116
0.4175 0.938 0.5
0.0566 0.4499 0.4309
0.6486 0.9181 1
0.0263 0.456 0.4547
6.4966 0.2736 0.9143
0.0207 0.4316 0.425
0.3548 0.968 1
0.0268 0.9497 1
0.203 0.9733 1
0.0756 0.9749 1
0.0113 0.3877 0.3877
0.0464 0.5975 0.7581
0.0226 0.4339 0.4276
4.5729 0.5519 1
0.0274 0.3558 0.3856
0.1315 0.9466 1
0.0234 0.66 1
0.137 0.3487 1
0.2906 0.9478 1
0.0729 0.9749 1
0.5437 0.969 1
0.0644 0.9749 1
0.8309 0.2968 0.522
0.0684 0.3154 0.4488
0.1321 0.6161 1
0.0719332 0.899748 0.5
0.8309 0.2968 0.522
0.0226 0.4541 0.4541
0.0265 0.3567 0.4468
0.0787 0.9749 1
4.5729 0.5519 1
0.0791 0.4627 1
0.0264 0.4465 0.3869
0.0791 0.9683 1
0.0104 0.3156 0.3018
0.2816 0.9711 1
0.3136 0.9754 1
0.1861 0.2909 0.317
0.012 0.9461 0.9459
0.0262 0.7376 0.7376
0.1166 0.966 1
0.0088 0.2612 0.4051
0.8309 0.2968 0.522
0.394 0.9534 1
0.0071 0.2531 0.317
0.0266 0.956 1
0.0362 0.2687 0.264
0.8309 0.2968 0.522
0.0407 0.6616 0.7599
0.0509 0.4555 0.4555
0.1393 0.9719 1
0.0506 0.412 0.4066
0.6408 0.4125 1
0.0052 0.3357 0.3357
0.0089 0.3146 0.3146
0.0172 0.3562 0.2831
0.5322 0.5958 0.5957
0.4758 0.9582 1
0.0386 0.4506 0.4473
0.0331 0.451 0.451
0.2482 0.9386 1
6.4966 0.2736 0.9143
0.0171 0.2937 0.4375
0.0228 0.2973 0.9807
0.1398 0.4725 1
0.4333 0.9503 1
0.0743 0.7525 1
0.0729 0.9752 1
0.1285 0.3225 0.3225
0.0676 0.9754 1
0.1979 0.9695 1
0.0733 0.466 0.4647
0.0651 0.9455 1
0.0804 0.9537 1
0.0268 0.9497 1
4.3399 0.2553 0.9231
0.1479 0.4082 1
0.2025 0.9523 1
0.0135 0.3773 0.3773
0.0131 0.3835 0.3797
0.0245 0.4235 0.4235
0.1417 0.4671 0.5117
0.8545 0.9421 1
0.4609 0.9399 1
0.2369 0.7826 1
0.2127 0.837 1
0.0078 0.4437 0.4437
0.1312 0.9121 0.5
0.0665 0.832 1
0.0708 0.9458 1
0.0051 0.2525 0.2525
0.0699 0.9749 1
0.0787 0.9749 1
0.1643 0.419 1
0.0268 0.9497 1
0.224 0.3972 1
0.0349 0.3212 0.4661
0.0792 0.864 1
0.307 0.968 1
0.0684 0.3154 0.4488
0.0059 0.2809 0.2809
0.0225 0.3185 0.4244
0.8359 0.9125 1
0.0666 0.9757 1
0.0352 0.3172 0.7439
0.2003 0.9653 1
0.1109 0.9428 1
0.0268 0.9497 1
0.0079 0.3469 0.344
0.0484 0.2526 0.4652
0.0181 0.3236 0.3173
0.0533 0.9576 1
0.251 0.9759 1
0.046 0.9068 0.5
0.0114 0.2665 0.2975
4.5729 0.5519 1
0.0068 0.2649 0.3328
0.0733 0.8885 0.5
0.0246 0.9749 1
0.0245 0.4235 0.4235
1.7875 0.9716 1
0.2078 0.9716 1
0.4831 0.9755 1
0.0854 0.8892 1
0.1085 0.9759 1
0.0778 0.3924 0
6.4966 0.2736 0.9143
0.0393 0.9477 1
0.0478 0.4157 0.4157
0.0151 0.4401 0.4401
0.0244 0.3276 0.3367
0.1854 0.9755 1
0.0383 0.9749 1
0.0394 0.4528 0.4445
0.8309 0.2968 0.522
0.0683 0.9512 1
0.1319 0.3686 0.3686
0.1541 0.9495 1
0.0543 0.4085 0.4085
0.0098 0.3237 0
0.0224 0.9753 1
0.0811 0.9443 1
0.9782 0.3334 1
0.0209 0.4437 0.4437
0.0225 0.9497 1
0.0245 0.4885 0.4858
0.0807 0.8881 0.5
0.0783 0.9337 1
0.2674 0.9759 1
0.0392 0.4666 0.4655
0.0268 0.9497 1
0.0787 0.5747 1
0.232 0.7902 1
6.253 0.3513 1
0.0174 0.3702 0.4571
0.3204 0.9374 1
0.0162 0.3743 0.295
0.0532 0.3285 1
0.0663 0.9754 1
0.0991 0.3112 1
0.0187 0.4404 0.4404
0.0288 0.296 1
0.0272 0.4289 0.4289
0.0075 0.4144 0.4144
0.2582 0.3667 1
0.0524 0.9749 1
0.0732 0.9641 0.5
0.0141 0.4151 0.4151
0.0259 0.2948 0.3446
6.4966 0.2736 0.9143
0.0197 0.4504 0.4504
0.1062 0.5072 1
0.0791 0.9641 0.5
0.1437 0.4022 1
0.1285 0.3225 0.3225
0.0791 0.5149 0.5149
0.0221 0.7059 0.7059
0.0052 0.2626 0.1795
0.003 0.4059 0.4087
0.7844 0.4522 1
0.0481 0.3103 1
0.1565 0.9446 1
0.0787 0.481 1
0.2234 0.9534 1
0.0104 0.4417 0.4359
0.1349 0.7338 1
0.052 0.4576 0.4576
0.2507 0.9475 1
0.1493 0.2503 0.5233
0.0322 0.4489 0.4433
0.0077 0.411 0.411
0.0052 0.2501 0.2501
4.5729 0.5519 1
0.1421 0.9749 1
0.0104 0.2837 0.2837
0.162194 0.942202 1
0.6408 0.4125 1
0.0118 0.3309 0.4488
1.5468 0.9428 1
0.0787 0.9749 1
2.0803 0.3124 1
0.0787 0.9756 1
0.0209 0.4428 0.4415
0.0725 0.7393 1
0.0077 0.411 0.411
0.1408 0.9749 1
0.1198 0.497 0.7273
0.5792 0.6007 1
6.4966 0.2736 0.9143
0.4748 0.9501 1
0.2143 0.9588 1
0.1307 0.4738 1
0.4652 0.9394 1
0.0219 0.2954 1
0.0228972 0.440055 0.434457
0.0866 0.878 0.9151
0.043 0.4671 0.4661
0.0517 0.2653 0.4652
0.7888 0.9458 1
0.0268 0.9497 1
0.012358 0.42484 0.42484
0.4418 0.9528 1
0.0279 0.3193 0.9432
0.1359 0.5585 0.5574
0.0267 0.2647 0.4592
0.0729 0.9752 1
0.0834 0.9199 0.9283
0.4532 0.9409 0.5
0.0073 0.327 0.2977
0.4446 0.3023 1
1.8643 0.9402 1
6.4966 0.2736 0.9143
0.0866 0.878 0.9151
0.0165 0.3528 0.246
0.0121 0.315 0.315
0.0161 0.451 0.4474
0.0477 0.9659 1
0.0787 0.7061 0.7061
0.0058 0.4372 0.4372
0.0126 0.3034 0
0.0311 0.4123 0.6963
0.0922 0.9712 1
0.0811 0.9333 0.5
0.1395 0.9719 1
0.0068 0.4194 0.4194
0.0162 0.3754 0.4575
0.5792 0.6007 1
0.1565 0.9446 1
0.0114 0.2819 0.3425
0.0673 0.4372 1
0.0787 0.9749 1
0.0794 0.9656 1
0.0247 0.4526 0.4526
0.15 0.4428 1
0.033 0.3763 0.4252
0.1406 0.6317 0.6317
0.0765 0.468 0.468
0.0765 0.3547 0.9468
0.0658 0.2862 0.2862
0.8309 0.2968 0.522
0.0787 0.975 1
0.011 0.2832 0.3504
0.0044 0.3923 0.3923
0.0088 0.4111 0.3873
0.3332 0.9718 1
0.004 0.3715 0.3715
0.0139 0.4247 0.4218
0.7943 0.8726 0.5
0.4784 0.9591 1
0.1491 0.9749 1
0.0787 0.9749 1
0.0661 0.94 1
0.0424 0.9703 0.5
0.2243 0.8692 1
0.005 0.2549 0.2458
0.0268 0.9497 1
0.4297 0.9417 1
0.0658 0.933 1
0.0105 0.2887 0.2887
0.0108 0.4116 0.4116
0.0075 0.4368 0.4368
0.1953 0.9677 1
0.0155 0.3241 0.3241
0.0502 0.2567 0.4653
0.137 0.9658 1
0.0669 0.4441 0.4441
0.026 0.3568 0.447
0.2171 0.4173 0.4918
0.0642 0.8997 0.5
0.0214 0.4592 0.4592
0.2215 0.4995 1
0.0074 0.284 0.2627
0.7701 0.9593 1
0.0794 0.9656 1
6.4966 0.2736 0.9143
0.6109 0.9749 1
0.0172 0.458 0.455
0.8309 0.2968 0.522
0.4963 0.9591 1
0.0665 0.9749 1
0.0726 0.2927 1
0.0233 0.4434 0.4428
0.1474 0.9428 1
0.0742 0.937 1
0.0742 0.4447 1
0.0536 0.9497 1
0.0464 0.5975 0.7581
0.0103 0.2799 0.3928
0.0408 0.4651 0.4651
0.3235 0.5171 1
0.1307 0.4738 1
0.0474 0.2764 0.2789
0.0442 0.9755 1
0.0817 0.3252 1
0.0129 0.4491 0.4491
0.0787 0.9749 1
0.069 0.9556 1
1.2144 0.94 1
0.5217 0.8209 1
0.0419 0.3041 0.9799
0.1406 0.6317 0.6317
0.0787 0.9749 1
0.0738 0.4228 0.7775
0.0798 0.4987 1
0.0085 0.4394 0.4394
0.6243 0.8374 1
0.0249 0.9241 0.5
0.0684 0.9538 1
0.0403 0.2651 0.2606
0.0271 0.2509 0.5605
0.1393 0.9719 1
0.0061 0.4405 0.4258
0.0101 0.3648 0.1484
0.0051 0.3995 0.3995
0.0124 0.2584 0.4595
0.0186 0.443 0.443
0.0148 0.4343 0.4343
0.0643 0.3912 1
0.4779 0.5619 1
0.0792 0.2539 1
0.0404 0.5588 0.5588
0.1493 0.2503 0.5233
0.155 0.9397 1
0.6408 0.4125 1
0.0667 0.6753 1
0.7844 0.4522 1
0.8359 0.9125 1
4.5729 0.5519 1
0.0607 0.4509 0.4505
0.0607 0.4637 0.4637
0.134 0.3452 1
0.0158 0.2893 0.2857
0.0168 0.4421 0.4442
0.0773 0.8997 0.5
0.221 0.9255 1
0.0502 0.2567 0.4653
0.2077 0.9497 1
0.0802 0.9518 1
6.4966 0.2736 0.9143
0.0126 0.3636 0.3453
0.2929 0.9759 1
0.0787 0.5385 0.5348
0.0504 0.2588 0.465
0.0097 0.4126 0.3681
0.0113 0.3794 0.4439
0.009 0.3461 0.3461
0.0787 0.9748 1
0.0651 0.9758 1
0.54 0.9706 1
0.2457 0.3356 1
0.0134 0.2588 0.296
0.0062 0.4543 0.4543
0.0058 0.2851 0.2851
0.0637 0.3127 0.2264
0.0729 0.8988 0.5
0.1374 0.9676 1
0.0207 0.4426 0.4426
0.0343 0.6654 1
0.0394 0.3097 0.3097
0.171 0.6375 1
0.0268 0.9497 1
0.2993 0.9381 1
0.0015 0.3298 0.3298
6.4966 0.2736 0.9143
6.4966 0.2736 0.9143
0.2135 0.8885 0.5
0.0428 0.9754 1
0.2701 0.9754 1
0.0221 0.9749 1
0.0216 0.4275 0.4241
0.2287 0.9715 1
0.0565 0.4637 0.4637
1.1933 0.9518 1
0.0731 0.9641 0.5
0.0811 0.5521 1
0.0042 0.394 0.394
0.0665 0.4561 1
0.0248 0.284 0.284
0.0695 0.9749 1
0.1014 0.7346 1
0.0117 0.3441 0.4562
0.0123 0.3262 0.325
0.0656 0.9496 1
0.0268 0.9497 1
0.8309 0.2968 0.522
0.1454 0.4251 0.5661
0.0227 0.2777 0.2854
0.0063 0.3826 0.3826
0.0751 0.4538 1
0.8392 0.9424 1
0.8309 0.2968 0.522
0.8309 0.2968 0.522
0.0262 0.3588 1
0.0682 0.9749 1
0.0134 0.335 0.335
0.0172 0.4106 0.4571
0.8309 0.2968 0.522
0.057 0.3026 0.3026
0.0061 0.4039 0.3914
0.0528 0.347 1
0.029 0.3914 0.4489
4.5729 0.5519 1
0.0197 0.2689 0.4544
0.0268 0.2766 0.3033
0.0076 0.4409 0.4409
0.0714 0.4634 0.4614
0.3292 0.9487 1
0.0115 0.324 0.3739
0.01 0.3516 0.3516
0.036 0.3256 0.4827
0.1352 0.8932 0.8932
0.2549 0.9429 1
0.6339 0.9749 1
0.2341 0.9315 1
0.1574 0.8997 0.5
0.0079 0.446 0.446
0.0268 0.9497 1
0.0682 0.9749 1
0.5782 0.943 1
0.023 0.4308 0.424
0.8309 0.2968 0.522
0.0517 0.2616 0.4651
0.4313 0.974 1
0.0225 0.3334 1
0.0208 0.3835 0.3067
0.0179 0.4161 0.4161
0.0918 0.9485 1
0.0475 0.2534 0.3116
0.1479 0.4082 1
0.0464 0.4659 0.4659
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