Detailed view for PF3D7_1407000

Basic information

TDR Targets ID: 2400
Plasmodium falciparum, LCCL domain-containing protein

Source Database / ID:  PlasmoDB   |   GeneDB   |   MPMP

pI: 7.0567 | Length (AA): 1272 | MW (Da): 142785 | Paralog Number: 0

Signal peptide: Y | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG4

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00530   Scavenger receptor cysteine-rich domain
PF01477   PLAT/LH2 domain
PF03815   LCCL domain
PF13385   Concanavalin A-like lectin/glucanases superfamily

Gene Ontology

Mouse over links to read term descriptions.
GO:0016020   membrane  
GO:0005515   protein binding  
GO:0005044   scavenger receptor activity  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 11 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
157 256 2fnq (A) 374 482 29.00 0.0000000000016 1 0.48 -1.3
157 277 2fnq (A) 374 497 25.00 0 1 0.35 -0.82
832 1015 2a3y (A) 9 193 14.00 0 1 0.26 -1.14
1172 1265 1jbi (A) 7 96 34.00 0.000000056 1 0.47 -0.12
47 141 3cwz (B) 929 1023 15.00 0.0061 0.37 0.136786 -0.28
50 141 1lox (A) 4 100 15.00 0.047 0.15 0.151427 -0.07
156 253 3dy5 (A) 373 479 33.00 0.072 1 0.470244 -0.37
408 641 5a2e (A) 50 259 33.00 0.00000023 1 0.246162 0.74
523 641 1by2 (A) 1 105 33.00 0.000006 1 0.436753 -0.57
835 1024 3flp (A) 15 213 13.00 0.49 0.9 0.288471 -0.02
1172 1265 1jbi (A) 7 96 34.00 0.00000053 1 0.529099 -0.69

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 80-100% percentile gametocyte. PlasmoDB
Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile Female Gametocyte. Lasonder E
Upregulation Percent Ranking Stage Dataset
Lower 20-40% percentile intra-erythrocytic - 8 hs, intra-erythrocytic - 16 hs, intra-erythrocytic - 24 hs, intra-erythrocytic - 32 hs, Sporozoite, Male Gametocyte. Otto TD Zanghi G Lasonder E
Upregulation Percent Ranking Stage Dataset
Lower 0-20% percentile intra-erythrocytic - 0 hs, intra-erythrocytic - 40 hs, intra-erythrocytic - 48 hs, Oocyst, Ring. Otto TD Zanghi G
Show/Hide expression data references
  • Otto TD New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq.
  • Lasonder E Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes. Molecular insight into sex-specific processes and translational repression.
  • Zanghi G A Specific PfEMP1 Is Expressed in P. falciparum Sporozoites and Plays a Role in Hepatocyte Infection.
  • PlasmoDB Data on upregulation of P. falciparum genes in different life cycle stages, combined from several microarray experiments available in PlasmoDB

Orthologs

Ortholog group members (OG5_135032)

Species Accession Gene Product
Babesia bovis BBOV_III008930   LCCL domain containing protein
Cryptosporidium hominis Chro.20090   scavenger receptor protein TgSR1 precursor
Cryptosporidium parvum cgd2_790   CpCCp3, multidomain extracellular protein with a signal peptide and the following architecture: LH2+LCCL+2xSR+LCCL+pentraxin+2xL
Neospora caninum NCLIV_024520   hypothetical protein
Neospora caninum NCLIV_038770   hypothetical protein
Plasmodium berghei PBANKA_1035200   LCCL domain-containing protein
Plasmodium falciparum PF3D7_1407000   LCCL domain-containing protein
Plasmodium knowlesi PKNH_1351100   multidomain scavenger receptor, putative
Plasmodium vivax PVX_086080   multidomain scavenger receptor, putative
Plasmodium yoelii PY01071   multidomain scavenger receptor protein PbSR precursor
Theileria parva TP04_0796   hypothetical protein, conserved

Essentiality

PF3D7_1407000 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
PBANKA_1035200 Plasmodium berghei Dispensable plasmo
Show/Hide essentiality data references
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.


Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets

Obtained from network model

Ranking Plot


Putative Drugs List


Compound Raw Global Species
0.0041 0.5942 0.5288
0.0543 0.2897 1
0.0048 0.2548 0.5
0.5622 1 1
0.0176 0.3081 1
0.1195 1 0.5
0.033 0.3013 1
0.5584 1 0.5
0.1747 1 1
0.0374 0.252 1
0.0097 0.2528 1
0.6982 0.5 0.5
0.0079 0.2831 1
0.8143 1 1
0.3465 1 1
0.0259 0.2997 1
0.5785 1 1
0.0417 0.2922 0.5
0.0477 0.2773 0.9042
0.0309 0.3068 0.5
0.0148 0.5163 1
0.0374 0.252 1
0.0175 0.2522 0.5
0.0477 0.2773 0.9042
0.024 0.2705 1
0.0359 0.5 0.5
0.0611 1 0.5
0.2287 1 1
0.4763 1 1
0.3998 1 1
0.018 0.2543 0.5
0.5622 1 1
0.4432 1 1
0.0349 1 1
0.0336 0.3464 1
0.438 0.9845 0.5
0.0167 0.5 0.5
0.0267 0.3338 1
0.0477 0.2773 0.9042
0.0541 0.313 1
0.0198 0.5304 1
0.0265 0.3054 0.5
0.0126 0.313 1
0.8016 0.5 0.5
0.1433 1 1
0.0019 0.2733 0.5
0.5914 1 1
0.2586 1 0.5
0.0163 0.3343 1
0.5723 1 0.5
0.4821 1 0.5
0.0362 0.3332 1
0.0272 0.2887 1
0.0247 0.3412 0.5
0.0304 0.2924 1
0.0484 0.3051 1
0.0062 0.2845 0.5
0.4915 0.9885 1
0.0396 0.4693 1
0.5537 1 1
0.0041 0.5942 0.5288
0.0477 0.2773 0.9042
0.4995 1 0.5
0.2437 0.8929 0.8696
0.385 1 1
0.0477 0.2773 0.9042
0.0221 0.3367 0.5
0.0194 0.2578 0.5
0.0607 1 0.5
0.5537 1 1
0.4265 0.376 1
0.0099 0.3293 0.5
0.4652 1 1
0.0477 0.2773 0.9042
0.0253 1 1
0.5378 1 1
0.0232 0.3077 1
0.0363 1 0.5
0.0299 1 0.5
0.5537 1 1
0.8143 1 1
0.0124 0.4202 1
0.0271 1 0.5
0.8143 1 1
0.0256 0.3101 1
0.0165 0.3344 1
0.1747 1 1
0.4209 0.9866 1
0.0489 1 0.5
0.3746 0.6187 1
0.0101 0.3221 1
0.5537 1 1
0.0202 0.282 1
0.6852 0.3717 1
0.0167 0.3369 1
0.2361 0.5532 1
0.0477 0.2773 0.9042
0.0257 0.253 0.5
0.4757 0.5 0.5
0.2851 1 1
0.0359 0.4345 1
0.0122 0.3265 1
0.0024 0.3191 1
0.0798 0.814 1
0.3998 1 1
0.0347 0.4149 1
0.1292 1 1
0.0329 0.3144 0.5
0.3746 0.6187 1
0.0119 0.3156 0.6127
0.0223 0.3005 1
0.0522 1 1
0.6549 1 1
0.472 1 1
0.0565 0.314 1
0.0264 0.266 1
0.1296 1 1
0.3568 0.354 1
0.0271 0.3918 1
0.6597 1 0.5
0.0455 1 1
0.0058 0.8369 1
0.4763 1 1
0.0061 0.3524 1
0.0109 0.3224 1
0.026 0.2815 1
0.0477 0.2773 0.9042
0.2969 1 0.5
0.0131 0.252 0.5
0.0048 0.2548 0.5
0.0384 1 0.5
0.2089 1 1
0.2031 0.5 0.5
0.0477 0.2773 0.9042
0.5537 1 1
0.0477 0.2773 0.9042
0.0059 0.2916 0.5
0.5584 1 0.5
0.0477 0.2773 0.9042
0.029 0.3093 0.5
0.0259 0.2541 1
0.8143 1 1
0.4726 1 1
0.235 1 1
0.0408 1 0.5
0.0267 0.3338 1
0.3917 1 0.5
0.0254 0.2532 0.5
0.0158 0.3343 1
0.2294 0.6095 1
0.0039 0.293 0.5
0.0477 0.2773 0.9042
0.2229 1 1
0.4911 0.9985 1
0.4233 0.5721 0.5
0.0496 1 0.5
0.0486 1 1
0.5254 0.5 0.5
0.0263 0.2556 0.5
0.1195 1 0.5
0.0477 0.2773 0.9042
0.0355 1 1
0.0202 0.2763 1
0.0147 0.265 1
0.1957 0.5 0.5
0.466 1 1
0.2862 0.2932 1
0.1498 1 0.5
0.0257 0.2539 0.5
0.3598 1 0.5
0.0057 0.2894 1
0.1433 1 1
0.4763 1 1
0.0226 0.2515 0.5
0.1077 0.9528 1
0.0477 0.2773 0.9042
0.0408 1 0.5
0.4881 0.5 0.5
0.0592 0.322 1
0.0397 0.3164 1
0.0166 0.341 1
0.1534 0.5805 1
0.0166 0.341 1
0.4753 1 0.5
0.0301 1 0.5
0.0255 0.3015 1
0.0802 0.8486 1
0.0271 0.3918 1
0.0239 0.3416 0.5
0.0354 0.3382 1
0.0085 0.273 0.5
0.0279 0.2952 1
0.0361 0.2783 0.5348
0.0483 0.3163 1
0.4209 0.9866 1
0.0286 0.309 0.5
0.31 0.919 1
0.0436 0.2913 1
0.6852 0.3717 1
0.083 1 0.5
0.0336 0.3035 1
0.0295 0.2851 1
0.0125 0.3502 1
0.038 0.4549 1
0.1747 1 1
0.5622 1 1
0.2969 1 0.5
0.1612 1 0.5
0.0024 0.316 0.5
0.0255 0.2838 1
0.0105 0.2651 1
0.5459 0.9863 1
0.0233 0.4066 1
0.0315 0.5 0.5
0.0242 0.2505 0.5
0.0175 0.2522 0.5
0.0226 0.3495 1
0.2287 0.5 0.5
0.3056 0.5 0.5
0.0326 1 0.5
0.2384 0.5 0.5
0.4544 0.5 0.5
0.385 1 1
0.053 1 1
0.4528 1 0.5
0.0543 0.2897 1
0.5584 1 0.5
0.0361 0.2783 0.5348
0.5622 1 1
0.0058345 0.287397 0
0.0217 0.2969 1
0.3156 1 0.5
0.0266 0.3004 1
0.0429 0.3518 1
0.0477 0.2773 0.9042
0.0059 0.2844 0.5
0.0991 1 1
0.0402 0.2839 1
0.0264 0.266 1
0.3956 1 0.5
0.6101 1 1
0.036 0.3131 1
0.5584 1 0.5
0.2851 1 1
0.0081 0.3323 1
0.4821 1 0.5
0.0416 0.5 0.5
0.4233 0.5721 0.5
0.0083 0.2721 0
0.0541 0.313 1
0.5537 1 1
0.0483 0.3163 1
0.5723 1 0.5
0.0057 0.2894 1
0.0124 0.3279 1
0.022 0.3402 1
0.0265 0.3421 1
0.0477 0.2773 0.9042
0.5584 1 0.5
0.2229 1 1
0.0609 0.3197 1
0.2977 0.5 0.5
0.0146 0.2576 0.5
0.011 0.302 0.5
0.0186 0.3112 0.5
0.121 1 1
0.0374 0.252 1
0.0265 0.2999 1
0.0147 0.265 1
0.0453 1 1
0.0048 0.3037 1
0.0477 0.2773 0.9042
0.2437 0.8929 0.8696
0.018 0.2965 1
0.0271 0.4664 1
0.0477 0.2773 0.9042
0.4705 1 1
0.0187 0.2635 1
0.0178 0.3067 1
0.0483 0.5 0.5
0.3918 0.4518 1
0.0048 1 0.5
0.0313 0.3064 1
0.0147 0.265 1
0.0042 0.2709 1
0.0477 0.2773 0.9042
0.0254 0.2629 0.5
0.0358 0.2727 1
0.0263 0.2567 1
0.0746 0.3125 1
0.0183 0.2792 1
0.4265 0.376 1
0.4528 1 0.5
0.5623 1 1
0.4337 1 0.5
0.0206 0.2517 0.5
0.0331 0.3046 1
0.00886176 0.5 0.5
0.0131 0.252 0.5
0.0037 1 0.5
0.0291 0.3094 0.5
0.0383 1 0.5
0.0122 0.2831 1
0.0258 0.2557 0.5
0.0205 0.2753 1
0.0061 0.285 0.5
0.2862 0.2932 1
0.0099 0.543 0.5
0.0477 0.2773 0.9042
0.0477 0.2773 0.9042
0.5272 0.5 0.5
0.5785 1 1
0.6101 1 1
0.0251 0.2533 0.5
0.0122 0.3265 1
0.0477 0.2773 0.9042
0.4528 1 0.5
0.2095 1 1
0.0104 0.2542 1
0.5914 1 1
0.0309 0.3122 0.5
0.0191 0.2733 1
0.0927 0.7456 1
0.0764 0.5 0.5
0.6506 0.5 0.5
0.6852 0.3717 1
0.004 0.2564 1
0.4233 0.5721 0.5
0.0201 0.3379 1
0.1747 1 1
0.0212 0.2913 0.0539
0.0024 0.3191 1
0.0117 0.2732 1
0.0262 0.2566 0.5
0.026 0.3061 1
0.0247 0.2543 1
0.385 1 1
0.0267 0.3218 1
0.0042 0.2667 0.5
0.0477 0.2773 0.9042
0.087 0.6934 1
0.0589 0.3014 0.5
0.0039 0.3077 1
0.0472 0.3129 1
0.028 1 0.5
0.0219 0.3128 1
0.6101 1 1
0.0477 0.2773 0.9042
0.0484 0.4293 0.5
0.0447 0.5187 1
0.0131 0.2747 1
0.0257 0.2545 1
0.0517 0.3057 1
0.4692 0.5 0.5
0.05 1 0.5
0.1199 0.5938 1
0.0333 0.5 0.5
0.4265 0.376 1
0.0219 0.3401 0.5
0.3746 0.6187 1
0.0097 0.3216 0.5
0.023 0.3483 1
0.0129 0.265 0.5
0.027 0.3344 1
0.0477 0.2773 0.9042
0.0144 0.3333 1
0.3918 0.4518 1
0.2862 0.2932 1
0.0147 0.265 1
0.0477 0.2773 0.9042
0.4652 1 1
0.2229 1 1
0.0991 1 1
0.0105 0.2936 1
0.0214 1 0.5
0.0062 1 0.5
0.0106 0.2681 0.5
0.0259 0.2541 1
0.0463 0.3044 1
0.0176 0.5244 1
0.0477 0.2773 0.9042
0.0183 0.2855 0.5
0.0258 0.3054 1
0.0189 1 0.5
0.0307 0.3446 0.5
0.0361 0.2783 0.5348
0.0477 0.2773 0.9042
0.4821 1 0.5
0.0435 0.3486 1
0.5067 1 0.5
0.0141 0.3313 1
0.0101 0.3201 1
0.33 0.7887 1
0.1747 1 1
0.0972 1 1
0.0048 0.5 0.5
0.3568 0.354 1
0.0444 0.4479 1
0.0271 0.3918 1
0.3296 0.5 0.5
0.0477 0.2773 0.9042
0.2743 1 1
0.0439 1 1
0.0362 0.3332 1
0.4305 1 0.5
0.02 0.3387 0.5
0.0259 0.3077 1
0.0426 0.4035 1
0.0263 0.2562 0.5
0.4101 0.6721 1
0.0301 0.832 0.5
0.0112 0.451 1
0.0093 0.296 1
0.008 0.2894 1
0.0161 0.3318 1
0.0199 0.2517 1
0.0592 0.322 1
0.0477 0.2773 0.9042
0.0122 0.3265 1
0.4265 0.376 1
0.0186 0.3112 0.5
0.0543 0.3109 1
0.4265 0.376 1
0.0489 1 0.5
0.0284 0.3444 1
0.046 0.3177 1
0.0214 1 0.5
0.0104 0.3224 0.5
0.5218 1 1
0.0324 0.3511 1
0.0262 0.2672 0.5
0.0286 0.309 0.5
0.0131 0.252 0.5
0.0224 0.3402 1
0.1746 0.5 0.5
0.0024 0.5 0.5
0.3746 0.6187 1
0.0048 0.2548 0.5
0.0044 1 1
0.1482 1 1
0.0592 1 1
0.0106 0.3224 0.5
0.0215 1 1
0.1675 0.4942 1
0.1681 1 0.5
0.0126 0.313 1
0.0139 0.328 1
0.3104 0.5 0.5
0.0302 0.3441 1
0.0336 0.3464 1
0.0477 0.2773 0.9042
0.0271 0.3918 1
0.2607 1 0.5
0.1393 1 1
0.0271 0.3918 1
0.0259 0.2724 1
0.0089 0.3529 1
0.0023 0.2772 0.5
0.385 1 1
0.1467 0.5 0.5
0.0415 0.3535 1
0.0813 0.8567 1
0.1019 0.3178 1
0.0216 0.2615 1
0.539 0.5 0.5
0.4432 1 1
0.0529 0.3122 1
0.0062 0.2845 0.5
0.0255 0.2524 0.5
0.0085 0.251 0.5795
0.0292 0.6781 0.5
0.1747 1 1
0.347 1 0.5
0.0257 0.2545 1
0.0477 0.2773 0.9042
0.0261 0.3274 1
0.0067 0.5 0.5
0.0262 0.2672 0.5
0.0048 0.3893 0.3893
0.0477 0.2773 0.9042
0.4432 1 1
0.2977 0.5 0.5
0.0453 1 1
0.5366 0.5 0.5
0.0117 0.2732 1
0.5387 1 1
0.3568 0.354 1
0.0165 0.3344 1
0.5504 1 1
0.0451 0.251 0.5
0.0477 0.2773 0.9042
0.0484 0.3051 1
0.0252 0.5 0.5
0.0993 1 1
0.0192 0.4294 1
0.0678 0.6901 1
0.3917 1 0.5
0.0613 0.3166 1
0.0161 0.3318 1
0.4705 1 1
0.0483 0.3163 1
0.5622 1 1
0.5876 1 0.5
0.0136 0.3021 0.5
0.5537 1 1
0.0361 0.2783 0.5348
0.0063 0.3107 0.5
0.0295 0.2851 1
0.0182 0.2854 0.5
0.4763 1 1
0.0084 0.305 0.5
0.4544 0.5 0.5
0.0105 0.3312 0.5
0.0609 0.3197 1
0.4424 1 1
0.0351 0.2658 0.5
0.0477 0.2773 0.9042
0.5622 1 1
0.0239 0.3009 0.5
0.0433 1 1
0.438 0.9845 0.5
0.0138 0.2859 0.5
0.0442 0.6072 1
0.0477 0.2773 0.9042
0.0313 0.3064 1
0.026 0.3429 0.5
0.0567 0.3138 1
0.0592 0.322 1
0.028 0.3439 0.5
0.5537 1 1
0.2616 1 1
0.0813 0.8567 1
0.0184 0.2526 0.5
0.0041 0.5942 0.5288
0.0039 0.29 0.5
0.0212 0.9443 0.9443
0.351 1 0.5
0.5206 1 0.5
0.0261 0.2598 1
0.0089 0.5 0.5
0.0262 0.2566 0.5
0.0483 0.5 0.5
0.5852 1 0.5
0.0191 0.2733 1
0.0166 0.341 1
0.026 0.3046 1
0.0349 1 1
0.0395 0.3094 1
0.0359 0.2862 0.5
0.0239 1 0.5
0.0057 0.2939 0.5
0.1749 1 1
0.4881 0.5 0.5
0.0149 1 0.5
0.0295 0.2851 1
0.0282 1 1
0.3484 1 1
0.0059 1 1
0.0242 0.288 1
0.4408 0.983 1
0.0294 0.3208 0.5
0.0121 1 1
0.026 0.2815 1
0.023 0.3417 0.5
0.0414 0.2927 0.5
0.4233 0.5721 0.5
0.0262 0.3421 1
0.0097 0.3051 0.5
0.0389 0.4267 1
0.4314 1 0.5
0.4455 1 1

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

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Gene identifier PF3D7_1407000 (Plasmodium falciparum), LCCL domain-containing protein
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