pI: 8.5602 |
Length (AA): 554 |
MW (Da): 64538 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 4
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 3 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
65 | 312 | 2wn9 (E) | 0 | 207 | 22.00 | 0 | 1 | 0.515353 | 0.66 |
78 | 311 | 5fjv (A) | 35 | 237 | 30.00 | 0 | 1 | 0.571483 | 0.83 |
78 | 312 | 2bj0 (A) | 5 | 203 | 20.00 | 0 | 1 | 0.439888 | 0.68 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Ortholog group members (OG5_192574)
Species | Accession | Gene Product |
---|---|---|
Brugia malayi | Bm1_38770 | Neurotransmitter-gated ion-channel ligand binding domain containing protein |
Caenorhabditis elegans | CELE_F58H7.3 | Protein LGC-30 |
Loa Loa (eye worm) | LOAG_09402 | hypothetical protein |
Loa Loa (eye worm) | LOAG_10712 | hypothetical protein |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Species | Target | Length | Identity | Alignment span | Linked Drugs | Reference |
---|---|---|---|---|---|---|
Rattus norvegicus | GABA-A receptor; anion channel | 467 aa | 21.9% | 375 aa | Compounds | References |
Rattus norvegicus | Serotonin 3a (5-HT3a) receptor | 483 aa | 21.9% | 388 aa | Compounds | References |
Aplysia californica | Soluble acetylcholine receptor | 236 aa | 22.9% | 218 aa | Compounds | References |
Rattus norvegicus | Serotonin 3 (5-HT3) receptor | 483 aa | 21.9% | 388 aa | Compounds | References |
Torpedo californica | Acetylcholine receptor protein alpha chain | 461 aa | 21.6% | 486 aa | Compounds | References |
Rattus norvegicus | Neuronal acetylcholine receptor | 452 aa | 21.9% | 483 aa | Compounds | References |
Rattus norvegicus | Nicotinic acetylcholine receptor alpha6/alpha3/beta2/beta3 | 464 aa | 22.8% | 482 aa | Compounds | References |