Detailed view for LmjF.17.0390

Basic information

TDR Targets ID: 24706
Leishmania major, protein kinase, putative
Source Database / ID:  TriTrypDB  GeneDB

pI: 6.0182 | Length (AA): 1202 | MW (Da): 128721 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0005524   ATP binding  
GO:0004713   protein tyrosine kinase activity  
GO:0004674   protein serine/threonine kinase activity  
GO:0004672   protein kinase activity  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 8 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
859 1202 1cm8 (A) 8 314 20.00 0 1 0.21 -0.47
862 1202 1z57 (A) 151 480 26.00 0.000000000077 1 0.53 -0.74
872 1164 1omw (A) 189 473 26.00 0 1 0.57 -0.66
923 1079 1phk () 71 230 32.00 0 0.84 0.53 -1.07
826 1200 3i6u (A) 164 487 28.00 0 1 0.25788 1.04
882 1079 2f2u (A) 98 295 32.00 0 0.96 0.392025 0.08
913 1079 3o0g (B) 20 203 32.00 0.000000000096 0.86 0.436235 -0.42
922 1080 2oid (A) 212 388 39.00 0 0.78 0.45558 -0.16

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile metacyclic. Fernandes MC
Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile amastigotes. Fernandes MC
Show/Hide expression data references
  • Fernandes MC Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures.

Orthologs

Ortholog group members (OG5_183420)

Species Accession Gene Product
Leishmania braziliensis LbrM.17.0370   protein kinase, putative
Leishmania donovani LdBPK_170440.1   protein kinase, putative
Leishmania infantum LinJ.17.0440   protein kinase, putative
Leishmania major LmjF.17.0390   protein kinase, putative
Leishmania mexicana LmxM.17.0390   protein kinase, putative

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.5

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Patiria pectinifera Cdc2 300 aa 26.5% 325 aa Compounds References
Homo sapiens Cyclin-dependent kinase 1/cyclin B1 297 aa 27.1% 325 aa Compounds References
Oryctolagus cuniculus Cyclin-dependent kinase 4 189 aa 32.0% 153 aa Compounds References
Schizosaccharomyces pombe 972h- Casein kinase II subunit alpha 332 aa 21.7% 337 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0023 0.5 0.5
0.0011 1 0.5
0.0093 0.8828 0
0.0029 0.5 0.5
0.0018 0.5 0.5
0.0037 1 0.5
0.0062 0.6935 0
0.0016 0.5 0.5
0.0059 1 1
0.0032 0.5 0.5
0.0007 0.5 0.5
0.0033 0.5 0.5
0.0007 0.5 0.5
0.0012 0.5 0.5
0.0059 1 1
0.0064 0.3377 0
0.0012 0.5 0.5
0.0098 0.3242 0.2614
0.0056 1 0.5
0.0088 0.4477 1
0.0063 1 1
0.0016 0.5 0.5
0.0033 1 1
0.0039 0.9485 0.5
0.0004 0.5 0.5
0.0081 0.5 0.5
0.0059 1 1
0.0039 0.5 0.5
0.0067 0.5 0.5
0.0042 0.5 0.5
0.0081 1 0.5
0.0066 0.3101 0
0.0008 0.5 0.5
0.0022 0.5 0.5
0.0036 0.5 0.5
0.0026 0.5 0.5
0.0091 1 0.5
0.0032 0.5 0.5
0.0012 0.5 0.5
0.0027 1 0.5
0.0069 0.3067 1
0.0063 0.7244 0.2543
0.0039 0.5 0.5
0.0061 0.6883 0.5304
0.0003 0.5 0.5
0.0007 0.5 0.5
0.0092 1 0.5

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier LmjF.17.0390 (Leishmania major), protein kinase, putative
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