Detailed view for TGME49_234440

Basic information

TDR Targets ID: 260280
Toxoplasma gondii, aminotransferase, putative
Source Database / ID:  ToxoDB 

pI: 6.1842 | Length (AA): 411 | MW (Da): 45632 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG5

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00155   Aminotransferase class I and II

Gene Ontology

Mouse over links to read term descriptions.
GO:0030170   pyridoxal phosphate binding  
GO:0003824   catalytic activity  
GO:0009058   biosynthetic process  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
1 401 3aow (A) 26 427 32.00 0 1 1.43687 -0.97
2 402 1wst (A) 17 414 32.00 0 1 1.43907 -0.97
5 406 2zy2 (A) 73 532 18.00 0 1 0.964302 0.56
336 371 1vjk (A) 23 56 41.00 1 0.22 0.453791 0.09

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 80-100% percentile ME49 merozoite. Hehl AB
Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile VEG Tachyzoite, ME49 Bradyzoite. Gregory Sibley/Greg
Upregulation Percent Ranking Stage Dataset
Lower 20-40% percentile ME49 Tachyzoite. Gregory
Upregulation Percent Ranking Stage Dataset
Lower 0-20% percentile ME49 Oocyst. Fritz HM
Show/Hide expression data references
  • Gregory ToxoDB
  • Sibley/Greg ToxoDB
  • Fritz HM Transcriptomic analysis of toxoplasma development reveals many novel functions and structures specific to sporozoites and oocysts.
  • Hehl AB Asexual expansion of Toxoplasma gondii merozoites is distinct from tachyzoites and entails expression of non-overlapping gene families to attach, invade, and replicate within feline enterocytes.

Orthologs

Ortholog group members (OG5_127007)

Species Accession Gene Product
Candida albicans CaO19.8771   similar to S. cerevisiae YER152C
Candida albicans CaO19.9645   Aromatic amino acid aminotransferase I
Candida albicans CaO19.2098   Aromatic amino acid aminotransferase I
Candida albicans CaO19.1180   similar to S. cerevisiae YER152C
Dictyostelium discoideum DDB_G0287711   hypothetical protein
Dictyostelium discoideum DDB_G0272014   hypothetical protein
Drosophila melanogaster Dmel_CG6321   CG6321 gene product from transcript CG6321-RA
Escherichia coli b1439   putative DNA-binding transcriptional regulator/putative amino transferase
Escherichia coli b4340   putative DNA-binding transcriptional regulator/putative aminotransferase
Homo sapiens ENSG00000109576   aminoadipate aminotransferase
Mus musculus ENSMUSG00000057228   aminoadipate aminotransferase
Neospora caninum NCLIV_049590   aminotransferase, putative
Saccharomyces cerevisiae YER152C   2-aminoadipate transaminase
Saccharomyces cerevisiae YGL202W   bifunctional 2-aminoadipate transaminase/aromatic-amino-acid:2-oxoglutarate transaminase
Toxoplasma gondii TGME49_234440   aminotransferase, putative

Essentiality

TGME49_234440 has direct evidence of essentiality
Gene/Ortholog Organism Phenotype Source Study
b1439 Escherichia coli non-essential goodall
b4340 Escherichia coli non-essential goodall
TGME49_234440 this record Toxoplasma gondii Probably non-essential sidik
Show/Hide essentiality data references
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Rattus norvegicus Kynurenine/alpha-aminoadipate aminotransferase Compounds References
Homo sapiens aminoadipate aminotransferase Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0288 0.5358 1
0.0346 0.3338 0.3338
0.0369 0.2638 0.2627
0.0427 0.4375 1
0.0641 0.8403 1
0.727 0.4981 1
0.0641 0.8403 1
0.037 0.32 0.32
0.0378 0.3214 0.3178
0.0357 0.3204 0.3204
0.6037 0.5383 1
0.0376 0.3204 0.3198
0.03 0.3008 1
0.0357 0.2561 0.2556
0.0427 0.4338 0.5
0.0349 0.7024 1
0.0357 0.3193 0.3193
0.0578 0.5885 1
0.0346 0.3207 0.3207
0.0347 0.2838 0.2832
0.0471 0.9533 1
0.0374 0.3199 0.3199
0.0373 0.3419 1
0.0354 0.289 0.2885
0.0368 0.3189 0.3189
0.0354 0.3281 0.3275
0.0367 0.2586 0.258
0.0359 0.2568 0.2563
0.105 0.4128 1
0.0333 0.3377 1
0.0353 0.2554 0.2549
0.0385 0.2603 0.4672
0.0333 0.3874 1
0.542 0.6317 1
0.0347 0.2555 0.2549
0.542 0.5216 1
0.753 0.8412 1
0.0374 0.3184 0.3176
0.0385 0.2603 0.4672
0.0342 0.2846 0.284
0.0356 0.3332 0.3305
0.0361 0.2571 0.2565
0.0347 0.2818 0.2818
0.0335 0.3779 1
0.727 0.4981 1
0.0691 0.6997 1
0.1352 0.4743 1
0.0347 0.2555 0.2549
0.0374 0.3199 0.3199
0.0691 0.6997 1
0.0132 0.5688 1
0.0257 0.263 1
0.0374 0.3184 0.3176
0.0383 0.3202 0.3196
0.0374 0.3184 0.3176
0.0427 0.4375 1
0.0176 0.8581 1
0.0348 0.3182 0.3182
0.0357 0.2591 0.2586
0.105 0.4128 1
0.0355 0.3205 0.3205
0.0374 0.3184 0.3176
0.0363 0.3202 0.3202
0.0363 0.2624 0.2613
0.0365 0.2586 0.258
0.542 0.5216 1
0.0342 0.2786 0.278
0.0346 0.3338 0.3338
0.0363 0.2586 0.2581
0.0348 0.3215 0.3203
0.0353 0.2571 0.2566
0.0355 0.3205 0.3205
0.0357 0.2591 0.2586
0.0378 0.3214 0.3178
0.0214 0.5698 0.5
0.035 0.3206 0.3206
0.0365 0.2559 0.2559
0.0427 0.4902 1
0.542 0.6317 1
0.0361 0.3209 0.3203
0.0346 0.3196 0.3196
0.0349 0.7024 1
0.0372 0.4095 0.5
0.0348 0.3215 0.3203
0.0385 0.2603 0.4672
0.0355 0.3178 0.3178
0.0304 0.3086 0.9489
0.6654 0.5381 1
0.0176 0.8581 1
0.0385 0.2603 0.4672
0.0427 0.695 1

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

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Gene identifier TGME49_234440 (Toxoplasma gondii), aminotransferase, putative
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