pI: 6.8409 |
Length (AA): 135 |
MW (Da): 15726 |
Paralog Number:
1
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 4 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
1 | 135 | 1tvj (A) | 1 | 153 | 29.00 | 0 | 1 | 1.2488 | -0.16 |
3 | 123 | 2i2q (A) | 4 | 123 | 28.00 | 0 | 0.61 | 1.2401 | -0.16 |
4 | 135 | 5ivu (A) | 6 | 138 | 40.00 | 0 | 1 | 1.52968 | -1.04 |
4 | 135 | 1cnu (A) | 2 | 133 | 33.00 | 0 | 1 | 1.46958 | -1.51 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Ortholog group members (OG5_127118)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT3G46010 | actin depolymerizing factor 1 |
Arabidopsis thaliana | AT4G25590 | actin depolymerizing factor 7 |
Arabidopsis thaliana | AT3G46000 | actin depolymerizing factor 2 |
Arabidopsis thaliana | AT1G01750 | actin depolymerizing factor 11 |
Arabidopsis thaliana | AT5G59880 | actin depolymerizing factor 3 |
Arabidopsis thaliana | AT5G59890 | actin depolymerizing factor 4 |
Arabidopsis thaliana | AT4G00680 | actin depolymerizing factor 8 |
Arabidopsis thaliana | AT5G52360 | actin depolymerizing factor 10 |
Brugia malayi | Bm1_22990 | actin-depolymerizing factor 1 |
Caenorhabditis elegans | CELE_C38C3.5 | Protein UNC-60, isoform A |
Cryptosporidium hominis | Chro.50095 | actin depolymerizing factor-related |
Cryptosporidium parvum | cgd5_2800 | actin depolymerizing factor |
Dictyostelium discoideum | DDB_G0277833 | hypothetical protein |
Dictyostelium discoideum | DDB_G0283367 | hypothetical protein |
Dictyostelium discoideum | DDB_G0291970 | hypothetical protein |
Drosophila melanogaster | Dmel_CG4254 | twinstar |
Drosophila melanogaster | Dmel_CG6873 | CG6873 gene product from transcript CG6873-RA |
Echinococcus granulosus | EgrG_000528800 | Actin binding cofilin tropomyosin type |
Echinococcus granulosus | EgrG_000528900 | actin depolymerizing factor |
Entamoeba histolytica | EHI_197480 | actophorin, putative |
Echinococcus multilocularis | EmuJ_000528900 | actin depolymerizing factor |
Echinococcus multilocularis | EmuJ_000528800 | Actin binding, cofilin tropomyosin type |
Homo sapiens | ENSG00000172757 | cofilin 1 (non-muscle) |
Homo sapiens | ENSG00000165410 | cofilin 2 (muscle) |
Leishmania braziliensis | LbrM.29.0450 | cofilin-like protein |
Leishmania donovani | LdBPK_290520.1 | cofilin-like protein |
Leishmania infantum | LinJ.29.0520 | ADF/Cofilin |
Leishmania major | LmjF.29.0510 | ADF/Cofilin |
Leishmania mexicana | LmxM.08_29.0510 | cofilin-like protein |
Loa Loa (eye worm) | LOAG_06843 | uncoordinated protein 60 |
Loa Loa (eye worm) | LOAG_00661 | actin-depolymerizing factor 1 |
Loa Loa (eye worm) | LOAG_06844 | actin-depolymerizing factor 1 |
Mus musculus | ENSMUSG00000062929 | cofilin 2, muscle |
Mus musculus | 12631 | cofilin 1, non-muscle |
Neospora caninum | NCLIV_012510 | hypothetical protein |
Oryza sativa | 4334594 | Os03g0820500 |
Oryza sativa | 4343240 | Os07g0484200 |
Oryza sativa | 4330233 | Os02g0663800 |
Oryza sativa | 4334595 | Os03g0820600 |
Oryza sativa | 4337605 | Os05g0113400 |
Oryza sativa | 4336622 | Os04g0555700 |
Plasmodium berghei | PBANKA_1137500 | actin-depolymerizing factor 2 |
Plasmodium falciparum | PF3D7_1361400 | actin-depolymerizing factor 2 |
Plasmodium knowlesi | PKNH_1109900 | actin-depolymerizing factor 2, putative |
Plasmodium vivax | PVX_115030 | actin-depolymerizing factor 2, putative |
Plasmodium yoelii | PY01091 | actin-depolymerizing factor 3 |
Saccharomyces cerevisiae | YLL050C | cofilin |
Schistosoma japonicum | Sjp_0207400 | ko:K05765 cofilin, putative |
Schistosoma mansoni | Smp_120700.1 | cofilin actophorin |
Schistosoma mansoni | Smp_086590 | actin-depolymerizing factor |
Schmidtea mediterranea | mk4.027380.00 | |
Schmidtea mediterranea | mk4.000142.08 | |
Schmidtea mediterranea | mk4.013858.00 | |
Trypanosoma brucei gambiense | Tbg972.3.5840 | cofilin/actin depolymerizing factor, putative |
Trypanosoma brucei | Tb927.3.5180 | ADF/Cofilin |
Trypanosoma congolense | TcIL3000_3_3160 | cofilin/actin depolymerizing factor, putative |
Trypanosoma cruzi | TcCLB.508411.10 | cofilin/actin depolymerizing factor, putative |
Trypanosoma cruzi | TcCLB.510145.20 | cofilin/actin depolymerizing factor, putative |
Toxoplasma gondii | TGME49_220400 | actin depolymerizing factor ADF |
Trichomonas vaginalis | TVAG_192620 | actin depolymerizing factor, putative |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
Tb927.3.5180 | Trypanosoma brucei | no significant loss or gain of fitness in bloodstream forms (3 days) | alsford |
Tb927.3.5180 | Trypanosoma brucei | significant loss of fitness in bloodstream forms (6 days) | alsford |
Tb927.3.5180 | Trypanosoma brucei | no significant loss or gain of fitness in procyclic forms | alsford |
Tb927.3.5180 | Trypanosoma brucei | significant loss of fitness in differentiation of procyclic to bloodstream forms | alsford |
CELE_C38C3.5 | Caenorhabditis elegans | embryonic lethal | wormbase |
CELE_C38C3.5 | Caenorhabditis elegans | larval lethal | wormbase |
CELE_C38C3.5 | Caenorhabditis elegans | slow growth | wormbase |
CELE_C38C3.5 | Caenorhabditis elegans | sterile | wormbase |
YLL050C | Saccharomyces cerevisiae | inviable | yeastgenome |
TGME49_220400 | Toxoplasma gondii | Probably essential | sidik |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.