Detailed view for Smp_127730

Basic information

TDR Targets ID: 291486
Schistosoma mansoni, ATP-citrate synthase
Source Database / ID:  GeneDB

pI: 6.5895 | Length (AA): 1164 | MW (Da): 128424 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00285   Citrate synthase, C-terminal domain
PF00549   CoA-ligase
PF16114   ATP citrate lyase citrate-binding

Gene Ontology

Mouse over links to read term descriptions.
GO:0046912   transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer  
GO:0006101   citrate metabolic process  
GO:0006085   acetyl-CoA biosynthetic process  
GO:0005737   cytoplasm  
GO:0005524   ATP binding  
GO:0005488   binding  
GO:0003878   ATP citrate synthase activity  
GO:0003824   catalytic activity  
GO:0044262   cellular carbohydrate metabolic process  
GO:0008152   metabolic process  

Structural information

Modbase 3D models:

There are 7 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
2 877 5te1 (A) 2 812 59.00 0 1 1.24298 0.04
567 909 3dmy (A) 102 401 15.00 0 0.91 0.117174 1.06
630 795 6mgg (A) 80 236 29.00 0.000000000014 1 0.546012 -0.69
868 1144 1aj8 (A) 80 354 25.00 0.011 0.99 0.243373 0.48
926 1154 2p2w (A) 137 354 22.00 0 0.89 0.339235 0.34
930 1150 1aj8 (A) 153 356 20.00 0 0.96 0.356363 -0.03
949 1058 1vgp (A) 164 270 31.00 0.011 0.13 0.236902 1.35

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129655)

Species Accession Gene Product
Arabidopsis thaliana AT3G06650   ATP-citrate lyase B-1
Arabidopsis thaliana AT5G49460   ATP citrate lyase subunit B 2
Brugia malayi Bm1_26245   ATP-citrate synthase
Caenorhabditis elegans CELE_B0365.1   Protein ACLY-2
Caenorhabditis elegans CELE_D1005.1   Protein D1005.1
Dictyostelium discoideum DDB_G0278345   ATP citrate lyase
Drosophila melanogaster Dmel_CG8322   ATP citrate lyase
Homo sapiens ENSG00000131473   ATP citrate lyase
Loa Loa (eye worm) LOAG_00507   ATP-citrate synthase
Mus musculus ENSMUSG00000020917   ATP citrate lyase
Neospora caninum NCLIV_048670   cDNA FLJ55447, highly similar to ATP-citrate synthase (EC 2.3.3.8), related
Oryza sativa 4325777   Os01g0300200
Schistosoma japonicum Sjp_0027590   ATP-citrate synthase, putative
Schistosoma japonicum Sjp_0121000   ATP-citrate synthase, putative
Schistosoma japonicum Sjp_0027600   ko:K01648 ATP citrate (pro-S)-lyase [EC2.3.3.8], putative
Schistosoma mansoni Smp_127730   ATP-citrate synthase
Schmidtea mediterranea mk4.001305.09   ATP-citrate synthase
Schmidtea mediterranea mk4.002624.00  
Schmidtea mediterranea mk4.003068.00   ATP-citrate synthase
Schmidtea mediterranea mk4.001305.08   Putative atp-citrate synthase
Schmidtea mediterranea mk4.000221.08   ATP-citrate synthase
Schmidtea mediterranea mk4.000566.06  
Schmidtea mediterranea mk4.007549.00  
Schmidtea mediterranea mk4.003829.01   ATP-citrate synthase
Toxoplasma gondii TGME49_223840   ATP-citrate lyase, putative

Essentiality

Smp_127730 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
TGME49_223840 Toxoplasma gondii Probably non-essential sidik
Show/Hide essentiality data references
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Rattus norvegicus ATP-citrate synthase Compounds References
Homo sapiens ATP citrate lyase Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0148 0.8825 1
0.0087 0.8825 1
0.019 0.8274 1
0.0087 0.8825 1
0.0228 0.4362 1
0.0398 0.8857 1
0.0244 0.8274 1
0.0077 0.584 0.584
0.0087 0.8764 1
0.018 0.8274 1
0.0087 0.4319 0.4319
0.0209 0.8612 1
0.0295 0.8315 1
0.0053 0.8193 1
0.0218 0.4674 1
0.0072 0.8769 1
0.0087 0.4068 0.4068
0.0087 0.2545 0.2499
0.0225 0.7846 1
0.009 0.4095 0.4094
0.0209 0.8612 1
0.039 0.8825 1
0.0143 0.8362 1
0.0146 0.8228 1
0.0276 0.8547 1
0.0394 0.2592 0.2592
0.0069 0.3402 0.3261
0.0176 0.8274 1
0.0072 0.8769 1
0.0398 0.8857 1
0.0087 0.3083 0.3083
0.0146 0.285 0.9391
0.0143 0.8362 1
0.0209 0.8612 1
0.015 0.8825 1
0.0394 0.2592 0.2592
0.0183 0.4763 0.4762
0.0055 0.5978 0.5824
0.0074 0.3706 0.0757
0.0193 0.3159 1
0.0179 0.4544 0.4544
0.0071 0.885 1
0.0135 0.8274 1
0.0055 0.5978 0.5824
0.0071 0.31 0.0756
0.0142 0.299 1
0.0087 0.3484 0.3484
0.0179 0.4544 0.4544
0.0146 0.8228 1
0.0073 0.8825 1
0.0098 0.5998 0.5844
0.0081 0.5742 0.5742
0.005 0.3324 0.4619
0.0055 0.8193 0.8337
0.0055 0.8193 0.8337
0.0098 0.5998 0.5844
0.0192 0.8633 1
0.0073 0.8825 1
0.0135 0.8274 1
0.0134 0.8274 1
0.0087 0.8825 1

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

No user comments are available for this gene. Log in to add comments, or register.

Enter your comment

User ()
Gene identifier Smp_127730 (Schistosoma mansoni), ATP-citrate synthase
Title for this comment
Comment