Detailed view for LbrM.35.0900

Basic information

TDR Targets ID: 429079
Leishmania braziliensis, hypothetical protein, unknown function

Source Database / ID: 

pI: 5.7354 | Length (AA): 1131 | MW (Da): 122244 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Pfam domains

PF00648   Calpain family cysteine protease

Gene Ontology

Mouse over links to read term descriptions.
GO:0005622   intracellular  
GO:0004198   calcium-dependent cysteine-type endopeptidase activity  
GO:0006508   proteolysis  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 6 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
80 214 5cwq (A) 8 151 21.00 0.076 0.39 0.279563 -0.19
87 300 5cwp (A) 2 225 14.00 0.0062 0.07 0.369413 -0.91
110 190 1y96 (B) 47 121 36.00 0.7 0.29 0.299718 0.74
415 754 1qxp (A) 5 327 24.00 0 0.95 0.256819 1.19
440 744 1ziv (A) 31 314 23.00 0 1 0.260873 0.89
443 679 2r9f (A) 47 262 31.00 0.000000000071 1 0.404649 0.58

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_184127)

Species Accession Gene Product
Leishmania braziliensis LbrM.35.0900   hypothetical protein, unknown function
Leishmania donovani LdBPK_360840.1   Calpain family cysteine protease, putative
Leishmania infantum LinJ.36.0840   hypothetical protein, unknown function
Leishmania major LmjF.36.0780   hypothetical protein, unknown function
Leishmania mexicana LmxM.36.0780   hypothetical protein, unknown function

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Leishmania major hypothetical protein, unknown function Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets

Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier LbrM.35.0900 (Leishmania braziliensis), hypothetical protein, unknown function
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