Detailed view for TcCLB.503715.40

Basic information

TDR Targets ID: 45838
Trypanosoma cruzi, STE/STE11 serine/threonine-protein kinase, putative
Source Database / ID:  TriTrypDB  GeneDB

pI: 8.5302 | Length (AA): 1178 | MW (Da): 127899 | Paralog Number: 1

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG4

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0004674   protein serine/threonine kinase activity  
GO:0004672   protein kinase activity  
GO:0035091   phosphoinositide binding  
GO:0005524   ATP binding  
GO:0005515   protein binding  
GO:0004713   protein tyrosine kinase activity  
GO:0007154   cell communication  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 9 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
678 1171 1omw (A) 29 474 16.00 0 1 0.48 0.2
885 1163 1s9j (A) 75 371 26.00 0.0000000035 1 0.56 -0.93
643 727 2q3a (A) 38 115 40.00 0.33 0.33 0.135256 0.95
680 1072 3v5w (A) 50 386 23.00 0.000000061 0.99 0.375716 0.82
700 790 1xte (A) 19 119 26.00 0.000000027 0.95 0.25475 -0.73
724 1176 5dyk (A) 410 823 23.00 0 1 0.43505 0.89
864 1176 2xik (A) 5 292 34.00 0 1 0.629205 -0.44
876 1173 2f2u (A) 90 377 23.00 0 1 0.445471 -0.03
879 1154 4x7q (A) 33 287 37.00 0.0000000000064 1 0.277395 0.72

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile metacyclic. Smircich P
Upregulation Percent Ranking Stage Dataset
Lower 20-40% percentile epimastigote. Smircich P
Show/Hide expression data references
  • Smircich P Ribosome profiling reveals translation control as a key mechanism generating differential gene expression in Trypanosoma cruzi.

Orthologs

Ortholog group members (OG5_166679)

Species Accession Gene Product
Leishmania braziliensis LbrM.07.1260   protein kinase, putative
Leishmania donovani LdBPK_071050.1   protein kinase, putative
Leishmania infantum LinJ.07.1050   protein kinase, putative
Leishmania major LmjF.07.0880   protein kinase, putative
Leishmania mexicana LmxM.07.0880   protein kinase, putative
Trypanosoma cruzi TcCLB.503715.40   STE/STE11 serine/threonine-protein kinase, putative
Trypanosoma cruzi TcCLB.509607.50   STE/STE11 serine/threonine-protein kinase, putative

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.5

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Rattus norvegicus Mitogen-activated protein kinase 1 358 aa 25.4% 303 aa Compounds References
Plasmodium falciparum (isolate 3D7) Cell division control protein 2 homolog 288 aa 26.5% 298 aa Compounds References
Rattus norvegicus Serine/threonine-protein kinase pim-3 326 aa 27.6% 297 aa Compounds References
Xenopus laevis Aurora kinase B-B 368 aa 26.4% 295 aa Compounds References
Xenopus laevis Aurora kinase B-A 361 aa 26.1% 295 aa Compounds References
Rattus norvegicus Cell division protein kinase 5 292 aa 28.1% 306 aa Compounds References
Homo sapiens Cyclin-dependent kinase 1/cyclin B1 297 aa 28.8% 309 aa Compounds References
Patiria pectinifera Cdc2 300 aa 28.1% 303 aa Compounds References
Schizosaccharomyces pombe 972h- Casein kinase II subunit alpha 332 aa 22.7% 291 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0098 0.3242 0.3649
0.0012 0.5 0.5
0.0016 0.5 0.5
0.0063 1 0.5
0.0056 1 0.5
0.0088 0.4477 0.5
0.0062 0.6935 0
0.0029 0.5 0.5
0.0093 0.8828 0
0.0018 0.5 0.5
0.0037 1 0.5
0.0023 0.5 0.5
0.0011 1 0.5
0.0012 0.5 0.5
0.0007 0.5 0.5
0.0064 0.3377 0
0.0059 1 1
0.0007 0.5 0.5
0.0033 0.5 0.5
0.0032 0.5 0.5
0.0059 1 1
0.0016 0.5 0.5
0.0012 0.5 0.5
0.0027 1 0.5
0.0069 0.3067 1
0.0032 0.5 0.5
0.0026 0.5 0.5
0.0091 1 0.5
0.0092 1 0.5
0.0007 0.5 0.5
0.0003 0.5 0.5
0.0061 0.6883 0.5304
0.0039 0.5 0.5
0.0063 0.7244 0.2543
0.0039 0.9485 0.5
0.0033 1 0.5
0.0022 0.5 0.5
0.0036 0.5 0.5
0.0008 0.5 0.5
0.0081 1 0.5
0.0066 0.3101 0
0.0081 0.5 0.5
0.0059 1 1
0.0004 0.5 0.5
0.0042 0.5 0.5
0.0039 0.5 0.5
0.0067 0.5 0.5

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier TcCLB.503715.40 (Trypanosoma cruzi), STE/STE11 serine/threonine-protein kinase, putative
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