Detailed view for PF3D7_0910500

Basic information

TDR Targets ID: 4780
Plasmodium falciparum, DNA repair protein REV1, putative
Source Database / ID:  PlasmoDB   |   GeneDB   |   MPMP

pI: 9.2973 | Length (AA): 1697 | MW (Da): 203097 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00817   impB/mucB/samB family
PF16589   BRCT domain, a BRCA1 C-terminus domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0005622   intracellular  
GO:0003887   DNA-directed DNA polymerase activity  
GO:0003684   damaged DNA binding  
GO:0006281   DNA repair  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 10 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
639 1023 1t94 (A) 79 509 13.00 0 0.95 -0.14 0.41
43 1006 3s5m (A) 166 1183 21.00 0.1 0.75 0.456061 1.56
662 984 3osn (A) 25 382 13.00 0.011 1 0.115836 1.09
1349 1567 4tql (A) 10 225 8.00 0.96 0 0.180551 -0.17
1376 1634 4wat (A) 178 442 28.00 0.21 0.09 -0.0603777 1.71
546 692 2fds (A) 25 186 33.00 0.3 0.04 0.0157745 1.15
625 950 3gqc (A) 347 741 18.00 0.000000037 1 0.279017 0.29
1067 1199 3gqc (A) 696 828 23.00 0.00032 0.91 0.44152 -0.52
1343 1565 4tql (A) 9 238 13.00 0.3 0.01 0.248286 -0.4
1375 1633 4wat (A) 178 442 30.00 0.072 0.09 -0.00618774 1.68

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile intra-erythrocytic - 0 hs, intra-erythrocytic - 8 hs, intra-erythrocytic - 16 hs, intra-erythrocytic - 48 hs, Sporozoite. Otto TD Zanghi G
Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile intra-erythrocytic - 24 hs, intra-erythrocytic - 32 hs, intra-erythrocytic - 40 hs, late schizont, Ring. Otto TD PlasmoDB Zanghi G
Upregulation Percent Ranking Stage Dataset
Lower 20-40% percentile Oocyst, Female Gametocyte, Male Gametocyte. Zanghi G Lasonder E
Show/Hide expression data references
  • PlasmoDB Data on upregulation of P. falciparum genes in different life cycle stages, combined from several microarray experiments available in PlasmoDB
  • Lasonder E Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes. Molecular insight into sex-specific processes and translational repression.
  • Otto TD New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq.
  • Zanghi G A Specific PfEMP1 Is Expressed in P. falciparum Sporozoites and Plays a Role in Hepatocyte Infection.

Orthologs

Ortholog group members (OG5_199117)

Species Accession Gene Product
Plasmodium falciparum PF3D7_0910500   DNA repair protein REV1, putative
Plasmodium knowlesi PKNH_0708500   DNA repair protein REV1, putative
Plasmodium vivax PVX_098965   DNA repair protein REV1, putative

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

No user comments are available for this gene. Log in to add comments, or register.

Enter your comment

User ()
Gene identifier PF3D7_0910500 (Plasmodium falciparum), DNA repair protein REV1, putative
Title for this comment
Comment