Detailed view for PF3D7_0925400

Basic information

TDR Targets ID: 4928
Plasmodium falciparum, protein phosphatase-beta
Source Database / ID:  PlasmoDB   |   GeneDB   |   MPMP

pI: 4.7192 | Length (AA): 466 | MW (Da): 53912 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00149   Calcineurin-like phosphoesterase

Gene Ontology

Mouse over links to read term descriptions.
GO:0016787   hydrolase activity  

Metabolic Pathways

mRNA surveillance pathway (KEGG)

Structural information

Modbase 3D models:

There are 12 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
5 458 1wao (1) 27 487 26.00 0 1 1.28 -0.16
135 452 1aui (A) 19 340 39.00 0 1 1.12 -1.71
160 456 1s70 (A) 8 306 45.00 0 1 1.3 -1.62
3 452 4ja7 (A) 36 482 25.00 0 1 1.26537 -0.3
160 456 1s70 (A) 8 306 45.00 0 1 1.26264 -1.22
161 466 3fga (C) 10 309 56.00 0 1 1.39995 -1.2
161 305 4iyp (C) 10 153 60.00 0 1 0.712459 0.32
168 450 1aui (A) 45 338 44.00 0 1 1.1916 -1.11
3 458 4ja7 (A) 36 487 25.00 0 1 1.28344 -0.33
161 466 3fga (C) 10 309 56.00 0 1 1.40545 -1.26
161 305 4iyp (C) 10 153 59.00 0 1 0.729959 0.04
168 450 1aui (A) 45 338 44.00 0 1 1.1861 -1.06

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile gametocyte, merozoite, sporozoite, early ring, early trophozoite, late ring, late trophozoite, Sporozoite, Male Gametocyte. PlasmoDB Zanghi G Lasonder E
Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile intra-erythrocytic - 24 hs, intra-erythrocytic - 32 hs, intra-erythrocytic - 40 hs, intra-erythrocytic - 48 hs, early schizont, late schizont, Oocyst, Female Gametocyte. Otto TD PlasmoDB Zanghi G Lasonder E
Upregulation Percent Ranking Stage Dataset
Lower 20-40% percentile intra-erythrocytic - 0 hs, intra-erythrocytic - 8 hs, intra-erythrocytic - 16 hs, Ring. Otto TD Zanghi G
Show/Hide expression data references
  • Lasonder E Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes. Molecular insight into sex-specific processes and translational repression.
  • PlasmoDB Data on upregulation of P. falciparum genes in different life cycle stages, combined from several microarray experiments available in PlasmoDB
  • Otto TD New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq.
  • Zanghi G A Specific PfEMP1 Is Expressed in P. falciparum Sporozoites and Plays a Role in Hepatocyte Infection.

Orthologs

Ortholog group members (OG5_127141)

Species Accession Gene Product
Arabidopsis thaliana AT1G69960   serine/threonine protein phosphatase 2A
Arabidopsis thaliana AT1G10430   protein phosphatase 2A-2
Arabidopsis thaliana AT3G58500   serine/threonine-protein phosphatase PP2A-3 catalytic subunit
Arabidopsis thaliana AT2G42500   serine/threonine-protein phosphatase PP2A-3 catalytic subunit
Arabidopsis thaliana AT1G59830   serine/threonine-protein phosphatase PP2A-1 catalytic subunit
Babesia bovis BBOV_I000740   serine/threonine protein phosphatase PP2A catalytic subunit
Brugia malayi Bm1_38390   protein phosphatase 2A.
Brugia malayi Bm1_34045   type 2A protein phosphatase catalytic subunit
Brugia malayi Bm1_41290   Ser/Thr protein phosphatase family protein
Candida albicans CaO19.1683   Serine-Threonine protein phosphatase 2A.
Candida albicans CaO19.9252   Serine-Threonine protein phosphatase 2A.
Caenorhabditis elegans CELE_C05A2.1   Protein PPH-1
Caenorhabditis elegans CELE_F38H4.9   Protein LET-92
Cryptosporidium hominis Chro.70100   hypothetical protein
Cryptosporidium hominis Chro.50440   hypothetical protein
Cryptosporidium parvum cgd7_810   protein phosphatase PP2A, calcineurin like phosphoesterase superfamily
Cryptosporidium parvum cgd5_4070   hypothetical protein
Dictyostelium discoideum DDB_G0290263   protein phosphatase 2A catalytic subunit
Drosophila melanogaster Dmel_CG7109   microtubule star
Echinococcus granulosus EgrG_001106500   serine:threonine protein phosphatase 2A
Entamoeba histolytica EHI_011950   serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform, putative
Echinococcus multilocularis EmuJ_001106500   serine:threonine protein phosphatase 2A
Giardia lamblia GL50803_5010   Ser/Thr phosphatase PP2A-2 catalytic subunit
Homo sapiens 5515   protein phosphatase 2, catalytic subunit, alpha isozyme
Homo sapiens ENSG00000104695   protein phosphatase 2, catalytic subunit, beta isozyme
Leishmania donovani LdBPK_251360.1   serine/threonine-protein phosphatase
Leishmania infantum LinJ.25.1360   serine/threonine protein phosphatase, putative
Leishmania major LmjF.25.1320   serine/threonine protein phosphatase, putative
Leishmania mexicana LmxM.25.1320   serine/threonine protein phosphatase, putative
Loa Loa (eye worm) LOAG_09990   hypothetical protein
Loa Loa (eye worm) LOAG_03638   type 2A protein phosphatase catalytic subunit
Loa Loa (eye worm) LOAG_08810   LEThal family member
Mus musculus ENSMUSG00000009630   protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
Mus musculus 19052   protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
Neospora caninum NCLIV_048330   hypothetical protein
Neospora caninum NCLIV_052160   Serine/threonine protein phosphatase (EC 3.1.3.16), related
Oryza sativa 4348601   Os10g0410600
Oryza sativa 4328734   Os02g0217600
Oryza sativa 4341364   Os06g0574500
Oryza sativa 4334494   Os03g0805300
Oryza sativa 4331747   Os03g0167700
Plasmodium berghei PBANKA_0826200   protein phosphatase-beta, putative
Plasmodium falciparum PF3D7_0925400   protein phosphatase-beta
Plasmodium knowlesi PKNH_0723300   protein phosphatase-beta, putative
Plasmodium vivax PVX_099685   protein phosphatase-beta, putative
Plasmodium yoelii PY00926   protein phosphatase-beta
Saccharomyces cerevisiae YDL188C   phosphoprotein phosphatase 2A catalytic subunit PPH22
Saccharomyces cerevisiae YDL134C   phosphoprotein phosphatase 2A catalytic subunit PPH21
Schistosoma japonicum Sjp_0083710   Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform, putative
Schistosoma mansoni Smp_165490   protein phsophatase-2a
Schmidtea mediterranea mk4.000058.24   Serine/threonine-protein phosphatase PP2A
Schmidtea mediterranea mk4.000033.06   Serine/threonine-protein phosphatase 6 catalytic subunit
Schmidtea mediterranea mk4.015572.00   Serine/threonine-protein phosphatase PP2A
Schmidtea mediterranea mk4.001170.02   Serine/threonine-protein phosphatase PP2A
Schmidtea mediterranea mk4.000206.02   FI07629p
Schmidtea mediterranea mk4.025254.02  
Schmidtea mediterranea mk4.002904.03   Serine/threonine-protein phosphatase PP2A
Schmidtea mediterranea mk4.032791.00  
Trypanosoma brucei gambiense Tbg972.3.990   serine/threonine-protein phosphatase, putative
Trypanosoma brucei Tb927.3.1240   Serine/threonine-protein phosphatase 2A, putative
Trypanosoma congolense TcIL3000_3_490   serine/threonine-protein phosphatase
Trypanosoma cruzi TcCLB.511881.20   serine/threonine-protein phosphatase
Trypanosoma cruzi TcCLB.509453.50   serine/threonine-protein phosphatase
Toxoplasma gondii TGME49_224220   serine/threonine-protein phosphatase PP2A catalytic subunit
Toxoplasma gondii TGME49_215170   serine/threonine-protein phosphatase 2A catalytic subunit beta isoform, putative
Theileria parva TP02_0853   serine/threonine protein phosphatase, putative
Trichomonas vaginalis TVAG_243240   protein phosphatase-1, putative

Essentiality

PF3D7_0925400 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb927.3.1240 Trypanosoma brucei significant loss of fitness in bloodstream forms (3 days) alsford
Tb927.3.1240 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb927.3.1240 Trypanosoma brucei significant loss of fitness in procyclic forms alsford
Tb927.3.1240 Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
CELE_F38H4.9 Caenorhabditis elegans embryonic lethal wormbase
CELE_F38H4.9 Caenorhabditis elegans larval arrest wormbase
CELE_F38H4.9 Caenorhabditis elegans larval lethal wormbase
CELE_F38H4.9 Caenorhabditis elegans sterile wormbase
PBANKA_0826200 Plasmodium berghei Essential plasmo
TGME49_215170 Toxoplasma gondii Probably essential sidik
TGME49_224220 Toxoplasma gondii Probably essential sidik
TGME49_215170 Toxoplasma gondii Essentiality uncertain sidik
TGME49_224220 Toxoplasma gondii Essentiality uncertain sidik
Show/Hide essentiality data references
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.6

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Homo sapiens protein phosphatase 2, catalytic subunit, alpha isozyme Compounds References
Bos taurus Serine/threonine protein phosphatase 2A, catalytic subunit, alpha isoform Compounds References
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Trypanosoma cruzi serine/threonine-protein phosphatase PP1, putative 159 aa 37.2% 153 aa Compounds References
Trypanosoma cruzi serine/threonine-protein phosphatase PP1, putative 294 aa 41.9% 272 aa Compounds References
Trypanosoma cruzi serine/threonine-protein phosphatase PP1, putative 294 aa 41.9% 272 aa Compounds References
Trypanosoma cruzi serine/threonine-protein phosphatase PP1, putative 294 aa 41.9% 272 aa Compounds References
Oryctolagus cuniculus Serine/threonine protein phosphatase PP1-alpha catalytic subunit 330 aa 43.6% 298 aa Compounds References
Trypanosoma cruzi serine/threonine-protein phosphatase PP1 alpha 169 aa 40.2% 169 aa Compounds References
Trypanosoma cruzi serine/threonine-protein phosphatase PP1 alpha 297 aa 41.5% 272 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0054 0.2586 1
0.0029 1 1
0.0053 0.2588 1
0.0029 1 1
0.0029 1 1
0.0029 1 1
0.0082 0.3989 1
0.0029 1 1
0.0023 1 1

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

No user comments are available for this gene. Log in to add comments, or register.

Enter your comment

User ()
Gene identifier PF3D7_0925400 (Plasmodium falciparum), protein phosphatase-beta
Title for this comment
Comment