Detailed view for PF3D7_1222300

Basic information

TDR Targets ID: 5266
Plasmodium falciparum, endoplasmin, putative

Source Database / ID:  PlasmoDB   |   GeneDB   |   MPMP

pI: 5.0443 | Length (AA): 821 | MW (Da): 95018 | Paralog Number: 0

Signal peptide: Y | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG3

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00183   Hsp90 protein
PF02518   Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Gene Ontology

Mouse over links to read term descriptions.
GO:0051082   unfolded protein binding  
GO:0005524   ATP binding  
GO:0009408   response to heat  
GO:0006950   response to stress  
GO:0006457   protein folding  

Structural information

Modbase 3D models:

There are 5 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
69 612 1y4s (A) 1 483 39.00 0 1 0.87 -0.34
72 280 1uyl (A) 17 223 57.00 0 1 1.12 -2.04
62 763 4ipe (A) 90 716 32.00 0 1 1.02175 0.21
70 330 3peh (A) 70 330 99.99 0 1 1.5456 -1.37
71 285 3k60 (A) 2 308 57.00 0 1 1.07458 -1.52

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

  • 3PEH:
  • Resolution Method # Atoms # Residues Dep. Date Pub. Date Mod. Date
  • 3PEJ:
  • Resolution Method # Atoms # Residues Dep. Date Pub. Date Mod. Date

Expression

Upregulation Percent Ranking Stage Dataset
Upper 80-100% percentile intra-erythrocytic - 0 hs, intra-erythrocytic - 8 hs, intra-erythrocytic - 16 hs, intra-erythrocytic - 24 hs, intra-erythrocytic - 32 hs, intra-erythrocytic - 40 hs, intra-erythrocytic - 48 hs, gametocyte, early schizont, early trophozoite, late trophozoite, Oocyst, Ring, Female Gametocyte, Male Gametocyte. Otto TD PlasmoDB Zanghi G Lasonder E
Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile sporozoite, early ring, late ring, late schizont, Sporozoite. PlasmoDB Zanghi G
Show/Hide expression data references
  • Zanghi G A Specific PfEMP1 Is Expressed in P. falciparum Sporozoites and Plays a Role in Hepatocyte Infection.
  • PlasmoDB Data on upregulation of P. falciparum genes in different life cycle stages, combined from several microarray experiments available in PlasmoDB
  • Otto TD New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq.
  • Lasonder E Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes. Molecular insight into sex-specific processes and translational repression.

Orthologs

Ortholog group members (OG5_153578)

Species Accession Gene Product
Babesia bovis BBOV_IV008400   heat shock protein 90, putative
Cryptosporidium hominis Chro.70410   heat shock protein 90
Cryptosporidium parvum cgd7_3670   heat shock protein 90 (Hsp90), signal peptide plus ER retention motif
Plasmodium berghei PBANKA_1437300   endoplasmin, putative
Plasmodium falciparum PF3D7_1222300   endoplasmin, putative
Theileria parva TP01_0934   heat shock protein 90, putative

Essentiality

PF3D7_1222300 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
PBANKA_1437300 Plasmodium berghei Essential plasmo
Show/Hide essentiality data references
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.


Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.3


Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Canis lupus familiaris Heat shock protein 90 beta 804 aa 39.5% 783 aa Compounds References
Sus scrofa Endoplasmin 804 aa 38.9% 786 aa Compounds References

Obtained from network model

Ranking Plot


Putative Drugs List


Compound Raw Global Species
0.0844 0.345 0.345
0.0371 0.3689 0.6008
0.0465 0.345 0.345
0.0694 0.345 0.345
0.0551 0.6063 0.6062
0.1279 0.6105 0.6103
0.0146 0.6295 0.6235
0.0107 0.2599 0.2599
0.0413 0.345 0.345
0.0746 0.6021 0.6021
0.1084 0.61 0.6098
0.0081 0.5145 0.5145
0.1185 0.6041 0.6035
0.1031 0.6029 0.6022
0.04 0.2716 0.345
0.0077 0.345 0.345
0.0324 0.5665 0.5145
0.0529 0.6064 0.6064
0.0207 0.3216 0.2925
0.1213 0.6048 0.6047
0.0059 0.3879 0.5145
0.0581 0.6053 0.6039
0.0139 0.345 0.345
0.008 0.345 0.345
0.0549 0.3851 0.5145
0.0704 0.5791 0.2987
0.0457 0.345 0.345
0.021 0.345 0.345
0.0456 0.5193 0.5145
0.1324 0.6048 0.6042
0.0414 0.5145 0.5145
0.0433 0.6075 0.5145
0.0199 0.345 0.345
0.0043 0.345 0.345
0.0642 0.345 0.345
0.0264 0.2789 0.5145
0.0271 0.5466 0.5145
0.1362 0.6043 0.6036
0.0082 0.5348 0.5348
0.0024 0.3552 0.345
0.0399 0.345 0.323
0.0024 0.345 0.345
0.008 0.5642 0.5642
0.1265 0.6082 0.6058
0.0583 0.3368 0.6068
0.0321 0.596 0.5145
0.0422 0.6078 0.6075
0.0048 0.345 0.345
0.0931 0.597 0.5878
0.1232 0.6081 0.5988
0.1177 0.6102 0.6101
0.0297 0.345 0.345
0.0088 0.345 0.2987
0.0048 0.345 0.345
0.0342 0.5955 0.5955
0.1511 0.6025 0.6025
0.019 0.345 0.345
0.1109 0.5964 0.5145
0.043 0.2557 0.596
0.1089 0.6032 0.6025
0.0024 0.345 0.345
0.0747 0.345 0.3148
0.0208 0.345 0.345
0.0128 0.5943 0.5145
0.0747 0.345 0.3148
0.0699 0.5574 0.5145
0.0199 0.3482 0.5735
0.0048 0.3086 0.5759
0.035 0.3782 0.6058
0.0209 0.4222 0.5145
0.0264 0.345 0.345
0.0122 0.345 0.345
0.0139 0.345 0.345
0.0285 0.552 0.5145
0.0129 0.345 0.345
0.0088 0.345 0.2987
0.0048 0.345 0.345
0.0228 0.3297 0.5887
0.0048 0.345 0.345
0.148 0.6056 0.6054
0.0048 0.345 0.345
0.0108 0.345 0.345
0.0048 0.345 0.345
0.0082 0.345 0.345
0.0936 0.345 0.3252
0.0044 0.3287 0.5382
0.0253 0.345 0.345
0.0708 0.6251 0.625
0.0474 0.509 0.345
0.0317 0.4471 0.6014
0.0391 0.345 0.3136
0.0939 0.345 0.345
0.0756 0.6095 0.6095
0.0042 0.345 0.345
0.1225 0.607 0.6055
0.0088 0.345 0.2987
0.0168 0.5606 0.5145
0.0708 0.345 0.3235
0.0724 0.414 0.5145
0.0435 0.345 0.345
0.0347 0.345 0.345
0.0088 0.345 0.2987
0.0638 0.5004 0.345
0.0024 0.3833 0.345
0.0214 0.6004 0.6004
0.0048 0.345 0.345
0.083 0.6088 0.6086
0.0272 0.3028 0.6058
0.068 0.345 0.345
0.1263 0.345 0.345
0.0763 0.345 0.345
0.1007 0.6089 0.608
0.0628 0.3789 0.6058
0.0411 0.5297 0.6082
0.0309 0.345 0.345
0.0275 0.3878 0.5996
0.0048 0.3086 0.5759
0.089 0.609 0.6088
0.0024 0.345 0.345
0.1032 0.6098 0.6097
0.0132 0.345 0.345
0.1324 0.6076 0.6063
0.0427 0.345 0.345
0.0238 0.5424 0.5395
0.004 0.2524 0.0692
0.0614 0.345 0.345
0.0048 0.345 0.345
0.031 0.6097 0.6096
0.0551 0.6069 0.6069
0.0861 0.6084 0.6084
0.0487 0.2962 0.5875
0.1046 0.603 0.603
0.0181 0.5145 0.5145
0.007 0.2524 0.0692
0.0024 0.345 0.345
0.0628 0.3789 0.6058
0.0122 0.345 0.345
0.0416 0.4888 0.6014
0.0285 0.5528 0.5145
0.0378 0.345 0.345
0.0486 0.5145 0.5145
0.0542 0.6066 0.6066
0.1248 0.6079 0.6052
0.0145 0.2836 0.2836
0.0112 0.2847 0.345
0.1535 0.6055 0.6052
0.0329 0.5672 0.5145
0.0048 0.345 0.345
0.0109 0.4268 0.4268
0.0208 0.345 0.345
0.0299 0.2501 0.345
0.0416 0.5884 0.5757
0.0024 0.345 0.345
0.1012 0.6022 0.6017
0.0288 0.2524 0.5259
0.0059 0.2874 0.345
0.0048 0.345 0.345
0.0024 0.345 0.345
0.0044 0.345 0.345
0.0903 0.551 0.5145
0.1236 0.609 0.609
0.0973 0.6095 0.6094
0.0655 0.6066 0.6042
0.1046 0.603 0.603
0.1447 0.6058 0.6053
0.0102 0.4536 0.5525
0.0036 0.2524 0.0692
0.0048 0.345 0.345
0.0088 0.5546 0.5224
0.0684528 0.402403 0.402403
0.129 0.6007 0.5145
0.0461 0.5624 0.609
0.0176 0.345 0.345
0.0022 0.2611 0.5145
0.00175793 0.350756 0.350756
0.1272 0.6098 0.6087
0.0139 0.6015 0.592
0.1205 0.6047 0.6042
0.1063 0.3466 0.6027
0.0024 0.345 0.345
0.0799 0.345 0.345
0.0088 0.345 0.2987
0.0024 0.345 0.345
0.0871 0.6048 0.5203
0.0117 0.345 0.345
0.1362 0.6043 0.6036
0.1535 0.6055 0.6052
0.049 0.5438 0.5145
0.1485 0.556 0.6061
0.1162 0.5727 0.5145
0.0145 0.4239 0.5606
0.0287 0.3279 0.5145
0.1363 0.5957 0.5145
0.0082 0.562 0.5145
0.0019 0.4381 0.3058
0.008 0.3349 0.6098
0.0162 0.345 0.345
0.0911 0.3053 0.52
0.1242 0.6103 0.6102
0.0802 0.345 0.345
0.0931 0.6103 0.6093
0.0858 0.345 0.345
0.0024 0.345 0.345
0.1358 0.6523 0.646
0.0372 0.5223 0.5924
0.004 0.345 0.345
0.0276 0.3246 0.5896
0.0101 0.2845 0.5419
0.0205513 0.58725 0.537816
0.0901823 0.402403 0.396952
0.0493 0.605 0.6011
0.0475 0.345 0.345
0.0273 0.3891 0.5923
0.0698 0.594 0.6037
0.0082 0.345 0.345
0.0048 0.345 0.345
0.0829 0.6089 0.6085
0.0134 0.3359 0.5145
0.0416 0.5884 0.5757
0.0541 0.6068 0.6062
0.0048 0.345 0.345
0.0714 0.6083 0.6078
0.0488 0.3069 0.5998
0.0796 0.345 0.3215
0.0643 0.6046 0.5145
0.0269 0.3044 0.5793
0.0628 0.3789 0.6058
0.0067 0.3117 0.5145
0.0169 0.3284 0.5931
0.0562 0.345 0.345
0.0048 0.345 0.345
0.0324 0.345 0.345
0.146 0.6059 0.6055
0.0544 0.345 0.345
0.0048 0.345 0.345
0.0072 0.345 0.345
0.0256 0.345 0.345
0.0184 0.5413 0.5216
0.046 0.6102 0.6098
0.1435 0.6055 0.6033
0.0489 0.2896 0.6061
0.0048 0.345 0.345
0.0167 0.5981 0.5145
0.0465 0.532 0.5145
0.0747 0.345 0.3148
0.0255 0.2819 0.589
0.0048 0.345 0.345
0.1266 0.6098 0.6094
0.0042 0.345 0.345
0.0048 0.345 0.345
0.0124 0.5145 0.5145
0.1272 0.6098 0.6087
0.1689 0.6058 0.6052
0.0292 0.5516 0.5145
0.0824 0.6 0.5991
0.0084 0.5105 0.196
0.1233 0.6049 0.6048
0.0249 0.5759 0.5145
0.109 0.6031 0.6031
0.0321 0.534 0.534
0.0598 0.345 0.345
0.0044 0.345 0.345
0.1122 0.3397 0.6042
0.1372 0.6044 0.5145
0.1296 0.5951 0.5145
0.0232 0.345 0.345
0.0312 0.3637 0.5989
0.0024 0.345 0.345
0.0048 0.345 0.345
0.0532 0.2628 0.345
0.0185 0.345 0.345
0.1274 0.6537 0.6504
0.0885 0.345 0.3244
0.0122 0.345 0.345
0.0385 0.5592 0.5145
0.0024 0.345 0.345
0.0352 0.605 0.5788
0.1314 0.6098 0.5977
0.1266 0.6042 0.6039
0.0137 0.345 0.345
0.0079 0.345 0.345
0.0298 0.5777 0.5145
0.0508 0.3598 0.6275
0.0046 0.3833 0.345
0.0153 0.3566 0.345
0.1063 0.3466 0.6027
0.0024 0.345 0.345
0.0519 0.5208 0.6028
0.1217 0.6103 0.6102
0.1052 0.6099 0.6097
0.0267 0.5467 0.5145
0.1431 0.3731 0.6047
0.0024 0.345 0.345
0.0701 0.6478 0.6478
0.0334 0.4781 0.6022
0.0048 0.5145 0.5145
0.0024 0.345 0.345
0.0342 0.5955 0.5955
0.0824 0.6 0.5991
0.0489 0.5145 0.5145
0.0747 0.345 0.3148
0.0084 0.3267 0.5145
0.0151 0.5145 0.5145
0.004 0.2524 0.0692
0.0152 0.345 0.3274
0.1261 0.4345 0.6108
0.1026 0.6426 0.5786
0.1004 0.6025 0.6018
0.0329 0.345 0.3369
0.0024 0.345 0.345
0.0341 0.5145 0.5145
0.1591 0.6499 0.6468
0.0048 0.345 0.345
0.0061 0.4854 0.4854
0.038 0.3315 0.3153
0.0094 0.345 0.345
0.1312 0.5953 0.5145
0.1295 0.6012 0.5145
0.0286 0.345 0.345
0.0105 0.345 0.345
0.0128 0.5145 0.5145
0.0185 0.525 0.5145
0.0321 0.257 0.5195
0.0533 0.5851 0.5844
0.0321 0.448 0.5971
0.0453 0.2962 0.6143
0.0254 0.345 0.345
0.0803 0.3394 0.3328
0.004 0.2524 0.0692
0.011 0.4483 0.345
0.0134 0.345 0.345
0.1213 0.6048 0.6047
0.1288 0.6121 0.6119
0.026 0.3071 0.5908
0.0591 0.6094 0.6078
0.0146 0.2881 0.6058
0.099 0.345 0.345
0.0857 0.6097 0.6096
0.0021 0.3462 0.345
0.0403 0.6001 0.5996
0.009 0.5145 0.5145
0.1136 0.6046 0.6029
0.004 0.345 0.345
0.1511 0.6025 0.6025
0.0045 0.345 0.345
0.0781 0.5953 0.5145
0.0048 0.345 0.345
0.0045 0.345 0.345
0.0503 0.5557 0.5145
0.0145 0.5328 0.5145
0.0208 0.345 0.345
0.0038 0.2524 0.0692
0.0048 0.345 0.345
0.1239 0.6049 0.5145
0.0048 0.345 0.345
0.0509 0.5996 0.5145
0.0518 0.6034 0.6034
0.0825 0.345 0.345
0.0956 0.592 0.5145
0.0088 0.345 0.2987
0.0134 0.345 0.345
0.108 0.5123 0.6024
0.0048 0.345 0.345
0.0414 0.6091 0.6091
0.002 0.345 0.345
0.0264 0.3575 0.3972
0.0872 0.345 0.319
0.0105 0.3468 0.5145
0.1272 0.6098 0.6087
0.00357295 0.402403 0.402403
0.1459 0.6012 0.5824
0.0112 0.5145 0.5145
0.0186 0.2927 0.5295
0.0179 0.2885 0.2885
0.0455 0.345 0.345
0.136 0.5133 0.6566
0.0269 0.2754 0
0.0082 0.345 0.345
0.0048 0.345 0.345
0.0789 0.6076 0.6076
0.0425 0.6035 0.5969
0.1019 0.6098 0.6098
0.0086 0.2832 0.196
0.0416 0.5884 0.5757
0.0399 0.3971 0.5145
0.0239 0.3204 0.2897
0.12204 0.606742 0.60962
0.0125 0.345 0.345
0.1368 0.4497 0.5764
0.056 0.6102 0.6102
0.0147 0.5145 0.5145
0.0048 0.345 0.345
0.0488 0.494 0.436
0.0088 0.345 0.2987
0.083 0.5803 0.5145
0.0273 0.5447 0.5145
0.0998 0.3451 0.5959
0.019 0.3742 0.5812
0.0451 0.3715 0.6076
0.0274 0.345 0.345
0.0992 0.6086 0.6086
0.1345 0.6048 0.6042
0.043 0.5952 0.5946
0.0044 0.345 0.345
0.0357 0.345 0.345
0.0136 0.345 0.345
0.0024 0.345 0.345
0.0955 0.6018 0.6011
0.1453 0.6054 0.6049
0.0717 0.578 0.5145
0.0959 0.6087 0.6087
0.0104 0.2795 0.5699
0.0294 0.345 0.345
0.0112 0.5852 0.5145
0.083 0.345 0.345
0.0752 0.6095 0.6095
0.0482 0.345 0.345
0.0421 0.6049 0.6049
0.0367 0.4063 0.6014
0.1027 0.6023 0.602
0.1511 0.6025 0.6025
0.0381 0.2948 0.345
0.0102 0.345 0.345
0.1314 0.6046 0.6042
0.0574 0.3215 0.6501
0.0998 0.6099 0.6096
0.0135 0.3012 0.243
0.0111 0.345 0.345
0.0107 0.2711 0.345
0.043 0.2557 0.596
0.1162 0.5448 0.5145
0.1389 0.6056 0.6051
0.0343 0.345 0.345
0.1114 0.6101 0.6099
0.0043 0.4293 0.4293
0.0742 0.5998 0.5145
0.0696 0.6393 0.5856
0.049 0.5438 0.5145
0.0246 0.5145 0.5145
0.008 0.515 0.5145
0.0186 0.345 0.345
0.0453 0.2962 0.6143
0.0659 0.5883 0.5145
0.0461 0.2604 0.5865
0.1341 0.6053 0.6048
0.0065 0.345 0.345
0.0149 0.345 0.345
0.0429 0.6002 0.5145
0.0024 0.345 0.345
0.0024 0.345 0.345
0.0048 0.345 0.345
0.1349 0.6054 0.6049
0.0733 0.4548 0.6073
0.0368 0.3004 0.345
0.0088 0.345 0.2987
0.0198 0.5342 0.2842
0.1288 0.6121 0.6119
0.0503 0.345 0.3054
0.0487 0.5896 0.5145
0.0542 0.6048 0.6031
0.1446 0.5972 0.5824
0.0849 0.345 0.3186
0.0486 0.4926 0.4337
0.0617 0.345 0.3203
0.0128 0.2574 0.345
0.055 0.6068 0.6061
0.0047 0.345 0.345
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