Detailed view for TcCLB.511389.80

Basic information

TDR Targets ID: 53702
Trypanosoma cruzi, AGC family serine/threonine kinase, putative
Source Database / ID:  TriTrypDB  GeneDB

pI: 8.156 | Length (AA): 686 | MW (Da): 76087 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG4

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain
PF14593   PH domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0004713   protein tyrosine kinase activity  
GO:0004674   protein serine/threonine kinase activity  
GO:0004672   protein kinase activity  
GO:0005524   ATP binding  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 11 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
138 602 2acx (A) 32 532 18.00 0 1 0.69 0.09
311 511 1qcf (A) 304 506 26.00 0 1 0.74 -1.45
111 511 2c0t (A) 80 480 16.00 0 0.9 0.666448 0.73
146 537 4tnd (A) 68 456 22.00 0 1 0.809329 0.03
267 531 2rku (A) 52 307 27.00 0 1 0.700897 -0.64
270 549 2vd5 (A) 75 363 31.00 0 1 0.711763 -0.33
274 657 3pvu (A) 197 653 24.00 0 1 0.649367 0.61
381 529 3nr9 (A) 278 479 38.00 0.0000014 0.87 0.169101 0.79
541 661 1w1g (A) 421 549 31.00 0 0.99 0.512985 -0.57
557 658 1w1h (C) 449 546 31.00 0 1 0.537588 -0.65
562 659 1pls (A) 2 104 20.00 0 0.07 0.121757 0.89

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_157978)

Species Accession Gene Product
Trypanosoma brucei gambiense Tbg972.4.4770   protein kinase, putative
Trypanosoma brucei Tb927.4.4590   AGC family serine/threonine kinase, putative
Trypanosoma congolense TcIL3000_4_3880   protein kinase, putative
Trypanosoma congolense TcIL3000_0_30740   protein kinase, putative
Trypanosoma cruzi TcCLB.511389.80   AGC family serine/threonine kinase, putative

Essentiality

TcCLB.511389.80 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb927.4.4590 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb927.4.4590 Trypanosoma brucei significant gain of fitness in bloodstream forms (6 days) alsford
Tb927.4.4590 Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb927.4.4590 Trypanosoma brucei significant loss of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.7

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Patiria pectinifera Cdc2 300 aa 26.4% 276 aa Compounds References
Rattus norvegicus Cell division protein kinase 5 292 aa 26.4% 250 aa Compounds References
Rattus norvegicus Jak1 protein 210 aa 24.0% 200 aa Compounds References
Homo sapiens Cyclin-dependent kinase 1/cyclin B1 297 aa 27.6% 261 aa Compounds References
Plasmodium falciparum (isolate 3D7) Cell division control protein 2 homolog 288 aa 27.3% 242 aa Compounds References
Oryctolagus cuniculus Cyclin-dependent kinase 4 189 aa 30.7% 153 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0032 0.5 0.5
0.0069 0.3067 1
0.0012 0.5 0.5
0.0027 1 0.5
0.0091 1 0.5
0.0026 0.5 0.5
0.0003 0.5 0.5
0.0007 0.5 0.5
0.0092 1 0.5
0.0039 0.5 0.5
0.0063 0.7244 0.2543
0.0061 0.6883 0.5304
0.0039 0.9485 0.5
0.0033 1 0.5
0.0008 0.5 0.5
0.0036 0.5 0.5
0.0022 0.5 0.5
0.0042 0.5 0.5
0.0039 0.5 0.5
0.0067 0.5 0.5
0.0081 0.5 0.5
0.0059 1 1
0.0004 0.5 0.5
0.0066 0.3101 0
0.0081 1 0.5
0.0098 0.3242 0.3649
0.0012 0.5 0.5
0.0016 0.5 0.5
0.0088 0.4477 0.5
0.0056 1 0.5
0.0063 1 0.5
0.0037 1 0.5
0.0018 0.5 0.5
0.0029 0.5 0.5
0.0093 0.8828 0
0.0062 0.6935 0
0.0011 1 0.5
0.0023 0.5 0.5
0.0033 0.5 0.5
0.0007 0.5 0.5
0.0064 0.3377 0
0.0059 1 1
0.0007 0.5 0.5
0.0012 0.5 0.5
0.0016 0.5 0.5
0.0032 0.5 0.5
0.0059 1 1

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

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User comments

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Gene identifier TcCLB.511389.80 (Trypanosoma cruzi), AGC family serine/threonine kinase, putative
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