Detailed view for TcIL3000_0_10410

Basic information

TDR Targets ID: 559558
Trypanosoma congolense, SUMO1/Ulp2, putative

Source Database / ID: 

pI: 9.9365 | Length (AA): 738 | MW (Da): 82137 | Paralog Number: 1

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Pfam domains

PF02902   Ulp1 protease family, C-terminal catalytic domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0008234   cysteine-type peptidase activity  
GO:0006508   proteolysis  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
22 164 4h79 (A) 32 188 28.00 0.45 0.89 0.453967 -0.18
437 727 3zo5 (A) 367 595 29.00 0.000000022 1 0.431509 0.26
476 593 3eay (A) 691 800 33.00 0.87 0.21 0.221092 1.33
479 727 2g4d (A) 450 644 32.00 0.0000000000065 1 0.415598 0.35

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_140391)

Species Accession Gene Product
Leishmania braziliensis LbrM.26.1990   SUMO1/Ulp2, putative,cysteine peptidase, Clan CA, family C48, putative
Leishmania donovani LdBPK_262070.1   SUMO1/Ulp2, putative
Leishmania infantum LinJ.26.2070   SUMO1/Ulp2, putative,cysteine peptidase, Clan CA, family C48, putative
Leishmania major LmjF.26.2070   SUMO1/Ulp2, putative,cysteine peptidase, Clan CA, family C48, putative
Leishmania mexicana LmxM.26.2070   SUMO1/Ulp2, putative,cysteine peptidase, Clan CA, family C48, putative
Trypanosoma brucei gambiense Tbg972.9.890   SUMO1/Ulp2, putative,cysteine peptidase, Clan CA, family C48, putative
Trypanosoma brucei Tb927.9.2220   SUMO1/Ulp2, putative
Trypanosoma congolense TcIL3000_0_10410   SUMO1/Ulp2, putative
Trypanosoma congolense TcIL3000_0_59400   SUMO1/Ulp2, putative
Trypanosoma cruzi TcCLB.505193.40   cysteine peptidase, Clan CA, family C48, putative
Trypanosoma cruzi TcCLB.503407.20   SUMO1/Ulp2, putative

Essentiality

TcIL3000_0_10410 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb09.160.0970 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb09.160.0970 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb09.160.0970 Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb09.160.0970 Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Leishmania major SUMO1/Ulp2, putative,cysteine peptidase, Clan CA, family C48, putative Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets

Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier TcIL3000_0_10410 (Trypanosoma congolense), SUMO1/Ulp2, putative
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