Detailed view for EgrG_000321550

Basic information

TDR Targets ID: 584077
Echinococcus granulosus, Biotin lipoyl attachment
Source Database / ID:  GeneDB

pI: 7.6095 | Length (AA): 508 | MW (Da): 53314 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00198   2-oxoacid dehydrogenases acyltransferase (catalytic domain)
PF00364   Biotin-requiring enzyme
PF02817   e3 binding domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0016746   transferase activity, transferring acyl groups  
GO:0045254   pyruvate dehydrogenase complex  
GO:0004742   dihydrolipoyllysine-residue acetyltransferase activity  
GO:0008152   metabolic process  
GO:0006090   pyruvate metabolic process  

Structural information

Modbase 3D models:

There are 5 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
61 166 2dnc (A) 2 97 47.00 0 1 0.642861 -0.09
62 155 1y8o (B) 128 226 60.00 0 1 0.995939 -1.18
265 508 1dpb (A) 399 637 30.00 0 1 0.850215 -0.07
272 505 3mae (A) 183 410 35.00 0 1 0.89183 -0.52
278 508 2ii3 (A) 193 418 29.00 0 1 0.808924 -0.49

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_128029)

Species Accession Gene Product
Arabidopsis thaliana AT3G13930   dihydrolipoamide acetyltransferase, long form protein
Arabidopsis thaliana AT1G54220   dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex
Brugia malayi Bm1_10875   dihydrolipoamide S-acetyltransferase
Candida albicans CaO19.6561   dihydrolipoamide acetyltransferase
Candida albicans CaO19.13914   dihydrolipoamide acetyltransferase
Candida albicans CaO19_6561   hypothetical protein
Caenorhabditis elegans CELE_F23B12.5   Protein DLAT-1
Chlamydia trachomatis CT_247   dihydrolipoamide acetyltransferase
Dictyostelium discoideum DDB_G0277847   dihydrolipoamide acetyltransferase
Drosophila melanogaster Dmel_CG5261   CG5261 gene product from transcript CG5261-RB
Echinococcus granulosus EgrG_000321550   Biotin lipoyl attachment
Echinococcus multilocularis EmuJ_000321550   Biotin lipoyl attachment
Homo sapiens ENSG00000150768   dihydrolipoamide S-acetyltransferase
Leishmania braziliensis LbrM.35.2870   dihydrolipoamide acetyltransferase precursor, putative
Leishmania donovani LdBPK_362790.1   dihydrolipoamide acetyltransferase precursor, putative
Leishmania infantum LinJ.36.2790   dihydrolipoamide acetyltransferase precursor, putative
Leishmania major LmjF.36.2660   dihydrolipoamide acetyltransferase precursor, putative
Leishmania mexicana LmxM.36.2660   dihydrolipoamide acetyltransferase precursor, putative
Loa Loa (eye worm) LOAG_16098   hypothetical protein
Loa Loa (eye worm) LOAG_10883   dihydrolipoamide S-acetyltransferase
Loa Loa (eye worm) LOAG_15745   hypothetical protein
Mus musculus ENSMUSG00000000168   dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
Oryza sativa 4339859   Os06g0105400
Oryza sativa 4343003   Os07g0410100
Oryza sativa 4328010   Os02g0105200
Saccharomyces cerevisiae YNL071W   dihydrolipoyllysine-residue acetyltransferase
Schistosoma japonicum Sjp_0216460   ko:K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide [EC2.3.1.12], putative
Schistosoma japonicum Sjp_0134970   Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial precursor, putative
Schistosoma mansoni Smp_194460   dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase
Schmidtea mediterranea mk4.000019.10   Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial
Schmidtea mediterranea mk4.065814.00  
Trypanosoma brucei gambiense Tbg972.10.9270   dihydrolipoamide acetyltransferase precursor, putative
Trypanosoma brucei Tb927.10.7570   dihydrolipoamide acetyltransferase E2 subunit, putative
Trypanosoma brucei Tb11.v5.0774   dihydrolipoamide acetyltransferase precursor, putative
Trypanosoma congolense TcIL3000_10_6510   dihydrolipoamide acetyltransferase E2 subunit, putative
Trypanosoma cruzi TcCLB.509717.20   dihydrolipoamide acetyltransferase precursor, putative
Trypanosoma cruzi TcCLB.510105.170   dihydrolipoamide acetyltransferase precursor, putative
Wolbachia endosymbiont of Brugia malayi Wbm0747   branched-chain alpha-keto acid dehydrogenase subunit E2

Essentiality

EgrG_000321550 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb927.10.7570 Trypanosoma brucei significant gain of fitness in bloodstream forms (3 days) alsford
Tb927.10.7570 Trypanosoma brucei significant gain of fitness in bloodstream forms (6 days) alsford
Tb927.10.7570 Trypanosoma brucei significant loss of fitness in procyclic forms alsford
Tb927.10.7570 Trypanosoma brucei significant loss of fitness in differentiation of procyclic to bloodstream forms alsford
CELE_F23B12.5 Caenorhabditis elegans embryonic lethal wormbase
CELE_F23B12.5 Caenorhabditis elegans slow growth wormbase
Show/Hide essentiality data references
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier EgrG_000321550 (Echinococcus granulosus), Biotin lipoyl attachment
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