Detailed view for EgrG_000107400

Basic information

TDR Targets ID: 589849
Echinococcus granulosus, uncharacterized sodium dependent transporter
Source Database / ID:  GeneDB

pI: 6.6301 | Length (AA): 562 | MW (Da): 62959 | Paralog Number: 2

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 12

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00209   Sodium:neurotransmitter symporter family

Gene Ontology

Mouse over links to read term descriptions.
GO:0016021   integral to membrane  
GO:0005328   neurotransmitter:sodium symporter activity  
GO:0006836   neurotransmitter transport  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
44 481 4us3 (A) 9 438 22.00 0 0.79 1.11666 -0.94
44 543 2a65 (A) 5 512 24.00 0 1 1.13838 -0.56
44 529 2a65 (A) 5 503 23.00 0 0.95 1.12007 -0.58
53 104 4p79 (A) 48 103 37.00 0.26 0.01 0.0572267 3.29

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_149315)

Species Accession Gene Product
Chlamydia trachomatis CT_231   Ssodium-dependent amino acid transporter
Echinococcus granulosus EgrG_000107700   uncharacterized sodium dependent transporter
Echinococcus granulosus EgrG_000107400   uncharacterized sodium dependent transporter
Echinococcus granulosus EgrG_000107600   sodium dependent neurotransmitter transporter
Echinococcus multilocularis EmuJ_000107600   sodium dependent neurotransmitter transporter
Echinococcus multilocularis EmuJ_000107700   uncharacterized sodium dependent transporter
Echinococcus multilocularis EmuJ_000107400   uncharacterized sodium dependent transporter
Schistosoma japonicum Sjp_0212640   ko:K03308 neurotransmitter:Na+ symporter, NSS family, putative
Schistosoma japonicum Sjp_0104670   ko:K03308 neurotransmitter:Na+ symporter, NSS family, putative
Schistosoma japonicum Sjp_0068620   IPR000175,Sodium:neurotransmitter symporter,domain-containing
Schistosoma japonicum Sjp_0303820   Conserved hypothetical protein
Schistosoma japonicum Sjp_0068600   Uncharacterized sodium-dependent transporter MJ1319, putative
Schistosoma mansoni Smp_129930   sodium-dependent neurotransmitter transporter
Schistosoma mansoni Smp_055260   sodium-dependent amino acid transporter
Schistosoma mansoni Smp_129900   sodium-dependent neurotransmitter transporter
Schmidtea mediterranea mk4.015432.02  
Schmidtea mediterranea mk4.010658.02  
Schmidtea mediterranea mk4.009867.02  
Schmidtea mediterranea mk4.004151.00  

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0345 0.2718 0.2701
0.0345 0.2718 0.2701
0.0243 0.2558 0.2558
0.0304 0.2539 0.2543
0.0304 0.2539 0.2543
0.0345 0.2718 0.2701
0.0304 0.2539 0.2543
0.0382 0.2719 0.2704
0.0345 0.2718 0.2701

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier EgrG_000107400 (Echinococcus granulosus), uncharacterized sodium dependent transporter
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