Caenorhabditis elegans (nematode): CELE_R107.8
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Entry
CELE_R107.8 CDS
T00019
Symbol
lin-12
Name
(RefSeq) lin-12/Notch intracellular domain
KO
K02599
Notch 1
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel04330
Notch signaling pathway
cel04361
Axon regeneration
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
CELE_R107.8 (lin-12)
09150 Organismal Systems
09158 Development and regeneration
04361 Axon regeneration
CELE_R107.8 (lin-12)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
Ank_2
hEGF
Ank
Notch
Ank_4
Ank_3
NOD
Ank_5
NODP
EGF_CA
EGF_3
EGF_2
DL-JAG_EGF-like
JAG1-like_EGF2
FXa_inhibition
Motif
Other DBs
NCBI-GeneID:
176282
NCBI-ProteinID:
NP_499007
WormBase:
WBGene00003001
Ensembl:
WBGene00003001
UniProt:
P14585
Structure
PDB
LinkDB
All DBs
Position
III:complement(9060221..9071472)
Genome browser
AA seq
1429 aa
AA seq
DB search
MRIPTICFLFLLISLSKSLHIGSCLGLICGRNGHCHAGPVNGTQTSYWCRCDEGFGGEYC
EQQCDVSKCGADEKCVFDKDYRMETCVCKDCDINGNSLLKPSCPSGYGGDDCKTQGWCYP
SVCMNGGQCIGAGNRAKCACPDGFKGERCELDVNECEENKNACGNRSTCMNTLGTYICVC
PQGFLPPDCLKPGNTSTVEFKQPVCFLEISADHPDGRSMYCQNGGFCDKASSKCQCPPGY
HGSTCELLEKEDSCASNPCSHGVCISFSGGFQCICDDGYSGSYCQEGKDNCVNNKCEAGS
KCINGVNSYFCDCPPERTGPYCEKMDCSAIPDICNHGTCIDSPLSEKAFECQCEPGYEGI
LCEQDKNECLSENMCLNNGTCVNLPGSFRCDCARGFGGKWCDEPLNMCQDFHCENDGTCM
HTSDHSPVCQCKNGFIGKRCEKECPIGFGGVRCDLRLEIGICSRQGGKCFNGGKCLSGFC
VCPPDFTGNQCEVNRKNGKSSLSENLCLSDPCMNNATCIDVDAHIGYACICKQGFEGDIC
ERHKDLCLENPCSNGGVCHQHRESFSCDCPPGFYGNGCEQEKMFRCLKSTCQNGGVCINE
EEKGRKCECSYGFSGARCEEKINLTGFTEKDSLLRSVCEKRKCSERANDGNCDADCNYAA
CKFDGGDCSGKREPFSKCRYGNMCADFFANGVCNQACNNEECLYDGMDCLPAVVRCPVKI
REHCASRFANGICDPECNTNGCGFDGGDCDNETNATIITNIRITVQMDPKEFQVTGGQSL
MEISSALRVTVRIQRDEEGPLVFQWNGESEMDRVKMNERQLTEQHVLSTSISRKIKRSAT
NIGVVVYLEVQENCDTGKCLYKDAQSVVDSISARLAKKGIDSFGIPISEALVAEPRKSGN
NTGFLSWNALLLIGAGCLIVMVVLMLGALPGNRTRKRRMINASVWMPPMENEEKNRKNHQ
SITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEP
ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC
IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF
GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK
DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL
IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPEREYSMDLHIQHTHQPQPSRKV
TRAPKKQTSRSKKESASNSRDSTHLTPPPSDGSTSTPSPQHFMNTTHTTPTSLNYLSPEY
QTEAGSSEAFQPQCGAFGNGEMWYTRASTSYTQMQNEPMTRYSEPAHYF
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgcggatccctacgatttgttttttatttcttcttatctcgttatcaaaatcgcttcat
attggctcatgtcttggcttaatatgtggaagaaatggtcactgccatgctggacctgtc
aatggaactcaaacttcttattggtgcagatgcgatgaaggatttggtggtgaatattgt
gaacaacagtgtgatgtttcaaaatgtggagccgatgagaaatgtgtttttgacaaagat
tatcggatggagacctgtgtctgtaaagattgcgacattaacggaaacagtctactaaaa
ccaagctgtccatccggttacggaggagacgactgtaagacacaaggatggtgttacccg
tctgtctgtatgaatggtggacagtgtattggagctggaaatcgagcaaaatgtgcatgt
ccagatggatttaagggggagagatgcgaacttgatgtcaatgaatgtgaagagaacaaa
aatgcatgtggaaataggagtacttgtatgaatacgctcggtacatacatttgcgtgtgt
ccccaaggattccttcctccggattgtctaaaacctgggaacacatcgaccgtcgaattc
aagcaaccagtttgttttctagaaatctcagcagatcatccagatggacgaagtatgtac
tgtcaaaatggtggattttgtgataaggcctcgtcgaaatgccagtgtccacctggatac
catggaagtacttgtgagttgttggagaaggaagattcatgtgcatcaaatccttgttct
catggagtttgtatttcattttctggaggatttcaatgtatttgtgatgatggatatagt
ggatcttattgtcaagaaggaaaggataattgtgtgaataataaatgcgaagctggatca
aaatgtatcaatggagtgaattcatatttctgtgattgcccaccagagagaaccggacca
tattgtgaaaagatggattgttctgcaattccagatatttgcaatcatggaacctgcatt
gatagtcctctatctgaaaaagctttcgagtgtcaatgtgaaccaggttatgagggaatt
ctctgtgaacaggataaaaacgaatgcctttcggaaaacatgtgcctgaataatgggaca
tgtgtcaatctgccaggctcatttcgatgcgattgtgcacgtggattcggtgggaaatgg
tgtgacgagccattgaatatgtgtcaagattttcactgtgagaatgatggaacttgtatg
cacacttctgatcactcacccgtatgtcagtgtaaaaacggatttattggaaaacgatgt
gaaaaggaatgtccaatcggattcggaggtgttcggtgtgatcttcgattggaaattgga
atatgctcacgacaaggtggaaagtgtttcaatggaggaaaatgtcttagcggattctgt
gtttgtccacctgattttactggaaatcagtgtgaagtcaacagaaaaaatgggaaaagc
tcgttatcagagaacctgtgtctatcggatccatgtatgaacaatgccacgtgtatcgat
gtagatgcccatattggatatgcatgtatatgtaaacaaggattcgaaggagatatttgt
gaaagacataaagatctttgtctcgagaatccatgctccaatggaggagtttgccatcaa
catcgtgagtcattctcatgcgattgcccgccagggttctatggaaatggttgtgaacag
gaaaaaatgttccgctgtctcaagagcacttgccaaaacggaggagtttgtattaatgaa
gaagagaagggaagaaaatgtgaatgttcatatggatttagtggagccaggtgtgaagaa
aaaatcaatttgactgggtttaccgagaaagacagccttctgcgatcagtttgcgagaaa
agaaaatgctccgagagagctaacgatggaaactgtgatgctgactgcaactatgctgca
tgtaaattcgacggaggtgactgttcaggaaaacgggaaccattttccaagtgtcgatat
ggaaatatgtgtgctgatttttttgcaaatggagtttgtaatcaagcttgtaacaatgaa
gaatgtctttacgatggaatggattgtttacctgcagttgttagatgtccagttaagatt
cgagaacattgtgcttcaagatttgcaaatggaatctgtgatccagaatgtaatacaaat
ggatgtggttttgatggtggtgattgtgataatgaaacgaatgccacaattatcacaaat
attcgaatcacagttcaaatggatcctaaagaatttcaagtaaccggaggtcaatcactt
atggagattagttcagctcttcgtgtaactgtccgaattcaaagagatgaagaaggacct
ctcgtgtttcaatggaatggggaatctgaaatggatcgagtcaaaatgaatgagagacag
ctcaccgagcaacatgttctttccacatcaatttccagaaaaatcaagagaagtgcaacg
aatattggagttgtcgtctatttggaagttcaagagaattgtgatacaggaaaatgtctc
tacaaggatgctcaaagtgttgttgactcaatatctgcaaggcttgcaaagaagggaatc
gattcttttggtattccaatctcagaagctcttgtcgcagagccaagaaaatctggaaac
aatacaggattcttatcatggaatgctcttcttctaattggtgctggatgtctgattgtt
atggttgttctgatgttaggagcattacctggaaatcggacaaggaaacgtcgaatgatc
aacgcctctgtctggatgccacctatggagaatgaggagaagaatcggaaaaaccatcaa
tcaataacttcaagtcagcattcacttctggaagcttcttatgatggttatatcaaaagg
caaagaaatgaactgcaacactattccttgtatccaaatcctcaaggatacgggaatgga
aatgatttccttggtgatttcaaccataccaatcttcaaattccaactgaacctgaacct
gaaagccccatcaaactacacacagaagctgcaggaagctatgcaattactgagcctatt
actagggaatccgtgaatattattgatccaaggcacaatagaacggttttgcattggatt
gcatcgaattcctcagccgaaaagtcagaagatttgattgtacatgaagctaaagaatgt
attgcggcaggagccgatgtgaatgctatggattgcgacgagaacaccccattgatgctg
gctgttcttgcaagaagacgacggcttgtggcttatctgatgaaagctggagccgatcca
accatctacaataaatctgaacgaagtgctcttcatcaagcggctgcaaatcgagatttt
ggaatgatggtctacatgttgaatagtacaaaattgaagggagatatcgaagaacttgat
agaaacggaatgacagccctgatgattgtagcacataatgagggaagagatcaagttgca
tctgcaaagttactcgttgaaaaaggagcaaaagttgattatgatggagctgcgagaaaa
gattcagaaaagtataaaggcagaacggcacttcactatgctgcccaagtgagtaatatg
ccaattgtgaagtatttggttggagagaaaggatccaataaggataagcaagatgaagat
ggaaagacgccgattatgttagctgcacaggaaggacgtattgaagttgtgatgtatttg
attcagcaaggggctagtgttgaagcggttgatgctacggatcatacggctcgtcaactc
gctcaagcaaataaccatcacaatattgttgatatttttgatagatgtcgtccagaacga
gaatattcaatggatcttcacatccaacatacccatcaaccacaaccttcaagaaaagta
actcgagctccgaagaaacagacaagtcgaagcaaaaaagagtcagcttccaattctcga
gactcaactcatctgacacctccaccatcggatggatcaacgtcaacaccgtcaccacag
cattttatgaataccactcatactacaccgacgagtttgaactatttgagcccagaatat
caaactgaagctggaagctcagaagcgttccaaccacaatgtggagcatttggaaatggc
gaaatgtggtatacaagagcttcaacatcgtacacccaaatgcagaatgaaccaatgacg
cgatactccgaaccagctcattatttttga
DBGET
integrated database retrieval system
