Caenorhabditis elegans (nematode): CELE_C42D4.8
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Entry
CELE_C42D4.8 CDS
T00019
Symbol
rpc-1
Name
(RefSeq) DNA-directed RNA polymerase subunit
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CELE_C42D4.8 (rpc-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cel03021
]
CELE_C42D4.8 (rpc-1)
Enzymes [BR:
cel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CELE_C42D4.8 (rpc-1)
Transcription machinery [BR:
cel03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
CELE_C42D4.8 (rpc-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
177491
NCBI-ProteinID:
NP_501127
WormBase:
WBGene00004411
Ensembl:
WBGene00004411
UniProt:
Q18566
LinkDB
All DBs
Position
IV:complement(7160135..7165748)
Genome browser
AA seq
1400 aa
AA seq
DB search
MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK
MGVSTKTGTCSTCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP
EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFA
SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEE
KHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSK
TLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFS
GRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEK
KTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGR
TFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQD
FITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRRPVELWTGKQLIEL
IIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIF
YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKC
SQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG
SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP
TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE
DGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHF
ADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLT
KTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV
PRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF
LLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSK
TMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKT
NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN
GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY
DKKAVLKQNSPIFERLNVTL
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagagcagtttcgggaggccgacaaggccttgaaagttgtcggcgtaaagttt
gctcctggagattgtgagtttatgcgtcagacggctcatgttccgattttcaataataaa
ttgtacgaagatgttgaaggaaaattgcagccagcaaactatggaccactcgatccgaaa
atgggagtctccacaaaaactggaacttgctctacatgcggtctcggactgacagattgt
gttggtcactttggctattttgatctcgatgttccagtgttccatattggatttttcaag
ttaactattcaattgcttcaatgcatctgcaaaaactgttcatctattcttctaactcct
gaacaacaccgtgtcttttctcgacaagttatgaatccaaatcttgattatctgcacaga
aaagcacttcataaacgcattgtcgcagcatgcaagaaaggttccacttgttctcattgt
ggcttgaaaaatggaaccgtaaaaaaagccgtcggagcagttctgaagattgccttcgcc
agtcctgtttcagtagacgaacttggtaaattcgctacaatgttcagttcaaaccaagaa
gttggtgatcatgttcgtaagatgaagttcacattgcttaatccactattcgtgcagaaa
cttttctccaatatcaaggaaggggacattcctgttctaatggttcgatccggagaggaa
aagcatccaaatgatcttcttctcactcgaatgccagttccaccagtttgcattcgtcct
tctgttgtttcagaagtcaaagctggaactactgaagatgatgtgactatgaagcttatg
gaaattatgttaacaaatgatgtactcaagaagcataaaagagatggagcacccagcaag
acacttttcgaaacttgggagcatcttcagatacaatgtgctctatacatcaattctgaa
atgtcaggacttccaccagatatgcaaccaaaaagagcgatgcgtgcatttactcaacgt
ctaaaaggaaaacagggaagattccgtggaaatctttgtggaaaacgtgttgatttctct
ggccgtactgtaatttcacccgatccaaatcttcgaatcgatcaagttggtgtgccaatc
cacgtcgccatgactctaacgttccccgaaattgtgaatgcatcaaatattgagaaaatg
cgtcaattggtaatcaatggaagtgatgttcacccgggagcgaattatttggtcgaaaag
aagacgggaaacaaaaagttattgaaatatggaaaaagagatgaactggcaaagaattta
agaatgggagatacaattgaacgtcaccttgatgataacgatgtggtcttgttcaatcgt
caaccatctcttcacaagatctctattatgagccatagagcaaaagtaatgccgggaaga
acgttcagattcaatgaatgtgcttgtactccctataacgccgattttgacggagatgaa
atgaatttgcatttaccacagacatatgaggcaaaagccgaagccagtgaattgatgaat
gtgaagaataacttgatcactcctcgttcaggagaacctcttgttgctgctattcaggat
ttcattactggaggatatttgctcactcataaggatacctttcttccacgtgccgaagta
taccgttttgctgctgctctcattgatgcatctgcaaagaaacaaacgaaaatccgaatt
ccaccaccagcaattcgtcgtcctgttgagctttggaccggaaagcaacttatcgagctc
attattcgcccagacaaaggttcggatgtgtcgctgaatttgaccgccaaaaataagtcg
tacactggaaatcttgaattgtgctccaaagattcgtacgttattatcagaaattcagtt
ctgttggcaggatgtttggataaatctctgttgggttcgtcgtcaaaagttaacattttc
tatatgttgatgagagattatggagaggacgctgcagttgatgcaatgtggagattagcc
agaatggctccagtatttctatcgaatcgtggattttccattggaatcggtgatgtacgc
ccaagtgagcagttgttgcgagaaaaggggcaattggtcgataatggatattcaaaatgt
tcgcaatatatcaaagagctggaagaaggaaaactaaaagctcaaccaggttgcactgaa
gaagaaactcttgaatcaattattttacgcgagctttcaacgattcgtgatcatgctgga
caagtatgtcttcgtaatttgagcaagtacaatgcaccattgactatggctgtttgtggt
tcaaaaggatctttcattaacatctctcaaatgattgcatgtgtcggacaacaggctatc
tctggacaccgaccgcccgatggattcgaagaacgttcacttccacatttcgaacgaaaa
aagaagacaccagaggcaaaaggattcgttgccaacagtttctactctggacttacacca
accgaattctttttccatacaatgggaggacgtgaaggtcttgtagatactgctgttaag
actgctgaaactggttacatgcaaagacgtcttgtcaaatgtctcgaggatctatgtgct
tcttatgatggtacagttcgttcttcagttggtgacgtcattgaatttgtgttcggagag
gatggactagatccagcaatgatggaagctaaggatggaagtgttgttgattttacgcac
gtcttggagcatgccaaaaatattcaaacaacgaaagagcaaccaattccagtggataag
ctcgatgaagtgctgaaagcagaaattcaaaagaaattcaaaggaaaatatgttcacttt
gctgataagcttagcgaatatatcactcaaactgaaattaagaaaagtaaaaagtggcaa
aatggaaaagctcattgcggaaatcatgagacagctgatttaaaaactaaagagtcttgc
aaaatttgcaagaatttggaagcctataaaacatcacttcttgcaaactcatgtctaaca
aagacccaactctgcagtttcattgaattatgttactataaagtggcaagagcaatcaca
gagcccggtactgcagttggagctattgccgcaactagtattggagaaccatcgactcaa
atgacactgaaaactttccatttcgccggagttgcttctatgaatattacacagggagtg
ccaagaatcaaggaaattatcaacgctgtcaagacaatttctactccaattatcactgca
gcactgctggatccttacgatgaatcgttagccagacgtgttaaagctagaattgaaaag
accacattgggagaaatctgcgactatattgaagaagtttaccttccggatgactatttc
ctacttgttaaactgaactcaaaacgtattcgacttcttcaattggaagtttgtatggaa
tcaatttcatatgcaattgcaacttcaaaagtgtgtccacagatgagaggatgtaaaatt
gttgctcatggaaagacaatgatggcaattcgaccaccatctacaagcaaattaagtaaa
actatgacaatgcaaattctcaaatattctctcgcaaatgtggtagtcaaaggaattcca
tcagtgaatcgatgtgtcattcatgcagatgaaaagaagggtgatttctattctcttttg
gttgaaggaactgatttccgatctgttctctcttctgttggagttgatccaagaaaaacg
aattttaataatgcactcgtggtcgctgatgttcttggaattgaagcagctcgttcgtgt
attatcaatgaaatcattgcaacaatggatgctcatggaattggattggatagacgtcac
gtcatgcttctcgcggatgttatgacttacagaggagaagtacttggaatcactcgtaat
ggtctcgttaaaatgaaagattccgtacttttacttgcttccttcgaaaaaacgatggat
cacttgtttgaagctgcatttttctctcaacgtgacgtgattcatggagtttcggagtgt
attattatgggaaccccaatgactgtcggaaccggtacattcaaattgatgcagaaatac
gacaagaaagccgttcttaaacagaattcgccgattttcgaacgtctgaacgtcactctt
taa
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integrated database retrieval system