Caenorhabditis elegans (nematode): CELE_F16A11.2
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Entry
CELE_F16A11.2 CDS
T00019
Symbol
rtcb-1
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cel
Caenorhabditis elegans (nematode)
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cel03016
]
CELE_F16A11.2 (rtcb-1)
Enzymes [BR:
cel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CELE_F16A11.2 (rtcb-1)
Transfer RNA biogenesis [BR:
cel03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CELE_F16A11.2 (rtcb-1)
Prokaryotic type
tRNA splicing ligases
CELE_F16A11.2 (rtcb-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
184556
NCBI-ProteinID:
NP_492498
WormBase:
WBGene00008877
Ensembl:
WBGene00008877
UniProt:
P90838
LinkDB
All DBs
Position
I:complement(9390833..9393095)
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AA seq
505 aa
AA seq
DB search
MPRTFEEECDFIDRLTDTKFRIKKGFVPNMNVEGRFYVNNSLEQLMFDELKFSCDGQGIG
GFLPAVRQIANVASLPGIVGHSIGLPDIHSGYGFSIGNIAAFDVGNPESVISPGGVGFDI
NCGVRLLRTNLFEENVKPLKEQLTQSLFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTL
REGYSWAEDKEHCEEYGRMLQADASKVSLRAKKRGLPQLGTLGAGNHYAEVQVVDEIYDK
HAASTMGIDEEGQVVVMLHCGSRGLGHQVATDSLVEMEKAMARDGIVVNDKQLACARINS
VEGKNYFSGMAAAANFAWVNRSCITFCVRNAFQKTFGMSADDMDMQVIYDVSHNVAKMEE
HMVDGRPRQLCVHRKGATRAFPAHHPLIPVDYQLIGQPVLIGGSMGTCSYVLTGTEQGLV
ETFGTTCHGAGRALSRAKSRRTITWDSVIDDLKKKEISIRIASPKLIMEEAPESYKNVTD
VVDTCDAAGISKKAVKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcacatttgaagaagaatgtgattttatcgatcgcttgacagacacaaagttt
cgaattaagaaaggttttgtgccgaatatgaatgtggagggacgattttatgtgaataat
agtctcgaacaattaatgtttgacgagttaaagttctcatgtgatggacaaggaatcggt
ggatttttgccagcggtcagacaaattgccaacgtggcatccctaccaggaattgttgga
cattcgattggtcttccagatattcactctggttatggtttttccattggaaacatcgct
gcgttcgacgttggaaatccagaatctgtaatctcacccggaggcgtcggttttgatatc
aactgtggagtacgattacttcgaacgaatctttttgaagaaaatgtaaagccattaaaa
gaacaactaacacaatcactttttgatcatattccagttggagttggttcacgtggtgca
attccaatgcttgcatcagatcttgttgaatgtttagaaatgggaatggattggacatta
cgtgaaggttattcatgggcagaagataaagaacattgtgaagaatatggacgaatgtta
caagcagatgcatcgaaagtttcattgagagctaaaaaacgtggacttccacaattggga
actcttggagcaggaaatcattacgcagaagttcaagttgtcgatgagatttatgataaa
catgctgcaagtacaatgggaattgatgaagaagggcaagttgttgtaatgcttcattgt
ggaagtcgaggacttggacatcaagttgcaactgactcattagttgaaatggaaaaagca
atggctagagatggaattgttgtaaatgataagcagcttgcgtgtgcaagaattaattcg
gttgaaggcaaaaactacttttccggaatggcggctgctgcaaacttcgcctgggttaac
agatcgtgtatcacattctgtgttcgtaatgcattccaaaagacatttggaatgtcagca
gatgatatggatatgcaagtaatctatgacgtgtcacataatgtagcaaaaatggaagag
catatggttgatggtagaccacgtcagctgtgtgttcatcgaaaaggagctacacgcgct
tttccggctcatcatccattaataccagttgattatcagttaattggacaacctgtacta
attggtggaagtatgggaacttgtagttatgttctaacaggaactgaacaaggattagtg
gaaacttttggaacaacatgtcatggagctggacgagcactttcacgtgccaaatcacgc
cgaactatcacttgggattcggtaattgatgatttgaaaaagaaggagatctcaattcgc
attgcatcgcctaaattgattatggaagaagcacccgaatcgtataagaatgtgacggac
gttgtagacacgtgtgatgcagctggcatcagtaaaaaggcggtcaaactgagaccaatt
gcggtcatcaagggataa
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