Caenorhabditis elegans (nematode): CELE_Y47G6A.20
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Entry
CELE_Y47G6A.20 CDS
T00019
Symbol
rnp-6
Name
(RefSeq) Poly(U)-binding-splicing factor rnp-6
KO
K12838
poly(U)-binding-splicing factor PUF60
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CELE_Y47G6A.20 (rnp-6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cel03041
]
CELE_Y47G6A.20 (rnp-6)
Spliceosome [BR:
cel03041
]
Complex A
U2 snRNP components
U2 related factors
CELE_Y47G6A.20 (rnp-6)
Complex B
CELE_Y47G6A.20 (rnp-6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
Motif
Other DBs
NCBI-GeneID:
171922
NCBI-ProteinID:
NP_491176
WormBase:
WBGene00004389
Ensembl:
WBGene00004389
UniProt:
Q9N3S4
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All DBs
Position
I:complement(<3539553..>3546910)
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AA seq
749 aa
AA seq
DB search
MEENSADIENRPVAAFRPAVSVPMPVLPQDGEVFVGPGGKKDAQKIGLGLSKLSSKRKDD
IQMAKKYAMDISIKQILLRQQKQQQENQQRQQMYSQALSIMSRIYVGSISFEIREDMLRR
AFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMF
QEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLAR
APTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKCVTPPDALTYLQPASVSA
IPASVSVACAAITAKVMAAEAAAGSSPKTPSESGGSRAASPAPRAQSPATPSSSLPTDIE
NKAVISSPKKEPEEIEVPPLPPSAPDVVKDEPMEIEEEEEYTIPEEKPKPVAIVPPPGLA
IPSLVAPPGLIAPTEIGIVVPNPSFLAQQQQKIEEKIEEEEEARTERVKLSTSQRKKMKR
EKLNQMTFEEKMAQVLGQQKAVQNQRMADPVTFGALDDTVAWKDPSNEDQTSEDGKMLAI
MGPGRGGDNVASMALALMDGGSSLMLANNAKAKEAAAALALEPKKKKKVKEGKKIQPKLN
TAQALAAAAKAGEMSDALKNEVMNSEDASLASQEGLEIRGNDARHLLMTKLMRTNRSNVI
VLRNMVTPQDIDEFLEGEIREECGKYGNVIDVVIANFASSGLVKIFVKYSDSMQVDRAKA
ALDGRFFGGNTVKAEAYDQILFDHADYTG
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaactcggcagacatcgaaaacaggccggtggcggcatttcggccggcagtg
tcagtgccaatgccagttcttccgcaagatggagaggtgttcgtaggacctggaggtaag
aaagacgctcaaaaaattggccttggtttatcgaaattgagttcaaagcggaaggatgat
attcagatggcgaaaaagtatgcgatggacatttcaattaagcagattcttcttcgtcag
cagaaacagcaacaggagaatcaacaacggcagcaaatgtactcacaagctttatcgatt
atgtccagaatctatgttggctcaatctcatttgaaatccgcgaagatatgcttcgcagg
gcttttgacccatttggacccattaaatctattaatatgagctgggatccagctactggg
caccacaaaacgttcgcatttgttgaatacgaagtcccagaagccgcacttcttgctcaa
gaatcgatgaatggtcagatgctcggtggacgtaatcttaaagttaattcgatgatgttc
caggagatgagattgccacaaaatatgccacaggctcagccgattattgatatggttcag
aaggatgcgaagaaatatttcagagtctacgtgtcctcagttcatccggatttatcagag
accgacctgaaaagtgtattcgaagcgttcggagaaattgtaaaatgtcagctggctcgt
gctcccacaggacggggacatcgtggatttggatacctcgaattcaataatttgacgtcg
caaagtgaggctatcgctggaatgaatatgttcgatttgggaggacaatatttgagagtc
ggcaaatgtgtaactccaccggatgctcttacctatcttcaaccggcatccgtcagtgca
attccagcaagtgtatcagttgcgtgtgcagcaattaccgcaaaagtgatggctgccgaa
gcagcagccggttcctcaccgaaaaccccgtcagaaagtggtggctcacgagctgcaagt
cctgctccaagagctcaatcaccagcaactccatcatcatctcttccaacagatattgag
aataaagcagttattagttcgccgaaaaaggagccggaagaaatcgaagttccaccacta
ccaccatctgctccagatgttgtaaaggatgagccaatggaaatcgaggaagaagaggaa
tatacaattcccgaagagaagccgaagcctgtagcaatcgttccacctccaggccttgct
atcccaagtctggtggctccgccggggctcattgctcccactgaaattggaatagttgtt
ccaaatccatcatttttagctcagcaacaacagaaaattgaagagaaaatcgaggaagaa
gaagaagctcgcacagaaagggtgaagctctcaacatcacagagaaaaaagatgaaacgg
gaaaagctgaatcaaatgacgtttgaggagaagatggctcaagttttaggccaacaaaag
gcagttcaaaatcaaagaatggcggatccagtgacatttggagctttagatgatactgta
gcatggaaggatccatcaaatgaagatcaaacttcagaagatgggaagatgttggctatt
atgggaccaggaagaggtggagataatgttgcaagtatggctcttgcattgatggatggt
ggaagttctctgatgcttgctaataatgcaaaggcaaaagaagcagctgcagcgttggcg
ctggaaccgaagaagaagaagaaagttaaggaagggaagaagattcagcccaagctcaac
acggctcaagctttagctgccgccgcaaaagccggtgaaatgtcggatgctttgaagaat
gaggttatgaatagtgaagatgcttcccttgcctcacaggaaggtctcgaaattcgtgga
aacgatgctcgtcatcttttaatgacaaaactgatgagaactaatcgatcaaatgtgatt
gttcttcgaaatatggtgactccacaggatatcgatgaattccttgagggcgagattcgt
gaagaatgtggaaaatatggaaatgtcattgatgtggtaatcgcgaattttgcatccagc
ggacttgtcaagatttttgtgaaatactcggattcgatgcaggtggatcgggcaaaagcg
gcactggatggacgattttttggtggaaatactgtcaaagcggaggcatatgatcagatt
ttatttgatcatgccgattatactggataa
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