Caenorhabditis elegans (nematode): CELE_F43G6.9
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Entry
CELE_F43G6.9 CDS
T00019
Symbol
patr-1
Name
(RefSeq) Protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CELE_F43G6.9 (patr-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_F43G6.9 (patr-1)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CELE_F43G6.9 (patr-1)
mRNA degradation factors
5'-3' decay
Decapping complex
CELE_F43G6.9 (patr-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3689
DUF3965
Motif
Other DBs
NCBI-GeneID:
174808
NCBI-ProteinID:
NP_496514
WormBase:
WBGene00009661
Ensembl:
WBGene00009661
UniProt:
Q20374
LinkDB
All DBs
Position
II:complement(11774668..11777943)
Genome browser
AA seq
833 aa
AA seq
DB search
MEEVKKYGKTLEEIEGGLMFDDFPESLVDSDEDHNIFDDEFDAANDETFGGGLDNIGENA
ELENYATQTAKLRFDDPVWQKPSSSDHVAPSASEIPIPFPNFGNGDASDSFKSSFEAESP
FLKKSIWGNGTDGAYNIWGTNFGISSVPAAPTLDLDFGALLPTPTIQATKEVKSSQIPSM
PSSALTLEDCERMQMGNKPDSLVDAFKDLQLGSTPVQPQSAQFSKHPLEARIAAPGTPAT
ASSQALPTLPTAALSLEELELQIMKEAQILKGRQQVPSDMREDNKFSHPPPGFNQNVQPR
MDPSLSPGGMHGMPPSMGTSMPHMGPMMPPQNMQLPRLPPLNPQFLPLIPVWFNAIINNI
QLPMGVPPPPPFLFQLLNHYRNPQLVHAMIMQSSIPPNIRQNGPQFSHPSGPHSPGNRVQ
RKHSGMPSTRTIYDLALDSFAGYMSYKEREWLIRIQFIQCKGSGDPQVDDYYYVTWRDKQ
IANGWTAETKLEEATKEKKEKSSESQKDYLERISRMNYREMQKERARERDKERQRERQER
IDRGEDKKLRQTLSDKFATSLGLPSKSSTHNPRHVLDMKAQVESVDNQTKKLSDEERKIA
VAKKLRTMLLRLEGALNILMEVDELRRSSLPEKSQFKDLSSDEKDQEVEKRTTVIINELM
GDDLSKLMQMSKGRAVITRTLKVVEPRDQARIILALMTAGGLVSKKMYGEIVLDILPVVY
QKVSNLHPDQFKYLVGALNLDTLKRQLLDSNMFIRDMMMTLFFVSVKNNQQLVEWAKATK
FSSLKMPSSAPLSIWRKALSVISDSEIKEFADDIKYSGIVDCHDVAQLIEQSL
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagtaaaaaagtatgggaaaactctcgaagagatcgaaggagggttgatgttc
gatgactttcccgaatctctggtggatagtgacgaggatcacaacattttcgacgacgag
tttgatgcagccaacgatgaaacattcggtggaggcttggacaatatcggcgaaaatgct
gagctcgagaactatgcgacacagactgcgaagttgaggttcgatgatcctgtctggcaa
aaaccctcatcttcggatcacgttgctccaagcgcctctgaaattccgattccttttcca
aattttggaaatggtgatgccagcgactcgtttaaatcaagctttgaagcagaatcaccg
tttttgaaaaaatcgatttggggaaacgggaccgatggagcatataacatttggggtacc
aatttcggaatttcttcagtacctgcagctcctacactggatcttgatttcggtgcactt
ttaccaactccgacgattcaagcaacaaaggaagtgaaatcatctcaaataccttctatg
cctagttcagctttaacgcttgaagactgcgagagaatgcagatgggaaacaaaccggac
tcgttggtagacgctttcaaggatctgcaacttggaagcactccagtacaaccccaatcc
gcacaattctcaaagcatcctcttgaagcgagaattgctgctcctggtaccccggcaacg
gcatcaagccaagctcttcccactctacctaccgcagctctttcattagaagaactcgag
ctacaaattatgaaagaagcccaaattttgaaaggccgacagcaagttccgtcagatatg
cgagaagataacaaattctcacatccacctccgggattcaatcaaaatgttcaacctcgt
atggatccgtcgttgtctccaggtggtatgcacggtatgcctccatcgatgggaacatct
atgccacatatgggaccaatgatgccaccacaaaacatgcagctgccgagactgccgcca
ctgaatccacagtttctaccgttgattcctgtatggtttaatgcaatcattaataacatt
cagttaccaatgggggttccaccgccgccaccatttttgtttcaacttttgaatcattat
cgcaatcctcagctcgttcacgctatgatcatgcagtcttcgatacctccaaatattagg
caaaatggtccacaattcagtcatccttctggacctcacagtccaggaaacagagttcag
cgtaaacattctggaatgccatctacacggacaatatatgatcttgcccttgattctttc
gctggttacatgtcttacaaggaacgtgaatggctcattagaatccaatttattcagtgt
aagggttctggtgatccgcaagtcgatgattattactatgtgacatggcgtgataagcaa
atagcgaacgggtggactgccgaaaccaagttggaagaagctactaaagagaagaaagaa
aagtcgtccgagtcacagaaggattatcttgaacgtatcagtcgaatgaattatcgagag
atgcagaaagagagggctcgtgaacgtgacaaggaacgacaaagagaacgtcaagaacga
attgatcgtggagaagacaaaaagttgcggcagacactttcagacaaatttgcaacaagt
ttgggtttgccatcaaaatcttctacccacaacccgcgccatgttctcgatatgaaggct
caagtagaaagcgtggacaatcaaacaaagaagttgtcggacgaagaaagaaaaatcgcc
gttgcgaagaaacttcgtacgatgcttctacgtttagaaggagcattgaacattctgatg
gaggttgatgagcttcgacgatcatcgctgcctgaaaagtcgcagtttaaagacttgagc
agcgatgagaaagaccaagaagttgagaagcgtacgacagttatcatcaacgaattaatg
ggggatgacttgtctaaactcatgcaaatgtccaaaggaagagcagttattacgagaact
cttaaagttgttgaaccaagagaccaagcaagaattattcttgcattgatgacggctggt
ggacttgtgagcaagaagatgtatggagagatcgttctggacattctcccagttgtttat
cagaaagtctcaaatcttcatcccgaccaattcaagtatcttgttggagctcttaacttg
gatactctcaagaggcaacttttggatagtaacatgttcatcagggacatgatgatgacg
ttgttctttgtcagtgtcaagaataatcaacaattggtggagtgggccaaagctacgaag
ttctccagcttaaaaatgccttcaagtgctccactcagtatctggagaaaggctctcagc
gtcattagcgacagcgagatcaaagaatttgccgatgatatcaagtactcaggaattgtc
gattgccatgatgtcgctcaactaatcgagcaatcactctaa
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