Caenorhabditis elegans (nematode): CELE_F36A4.7
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Entry
CELE_F36A4.7 CDS
T00019
Symbol
ama-1
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03020
RNA polymerase
cel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CELE_F36A4.7 (ama-1)
09124 Replication and repair
03420 Nucleotide excision repair
CELE_F36A4.7 (ama-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cel03021
]
CELE_F36A4.7 (ama-1)
03400 DNA repair and recombination proteins [BR:
cel03400
]
CELE_F36A4.7 (ama-1)
Enzymes [BR:
cel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CELE_F36A4.7 (ama-1)
Transcription machinery [BR:
cel03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CELE_F36A4.7 (ama-1)
DNA repair and recombination proteins [BR:
cel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CELE_F36A4.7 (ama-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
177190
NCBI-ProteinID:
NP_500523
WormBase:
WBGene00000123
Ensembl:
WBGene00000123
UniProt:
P16356
LinkDB
All DBs
Position
IV:4248070..4258169
Genome browser
AA seq
1856 aa
AA seq
DB search
MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI
DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR
VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRY
QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE
WMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD
VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV
ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGAR
VDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNL
SVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVR
MMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTH
STHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAA
NFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLE
PTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIA
CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNM
PTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLL
RKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGN
DEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEM
VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGA
AAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSR
TSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDK
GEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGF
KSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF
DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE
DPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPSNRE
FSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDP
LGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYS
PTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPS
YSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSS
PQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPSSPTYDPNS
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggctctcgtcggtgtcgacttccaagcgccgctgcgcattgtctcacgcgttcagttt
ggaattctcggcccggaggagattaaacgcatgtcagtggctcatgtcgagtttccagaa
gtctacgagaacggaaagccaaagttgggcggtctcatggatccaagacaaggagtcata
gatcgtcgtggaagatgcatgacatgcgctggaaatttgacagattgcccgggacatttc
ggtcatttggagctcgccaaacccgtatttcacattggattcctcacaaaaacgctgaaa
atactgcgttgcgtatgcttctactgcggacggcttctcatcgacaaatccgctcctcga
gtgctggaaattctgaaaaagactggcacaaactcgaaaaagcggctcacaatgatctac
gatctgtgcaaagccaagtcggtgtgcgaaggagcagcggagaaggaagaaggaatgcca
gatgacccggatgatccgatgaatgatggaaagaaggtcgcaggtggatgcggtcgctat
caaccatcataccgccgtgtcggcatcgacatcaacgcagaatggaagaagaacgtgaat
gaggacacgcaggagcgaaaaatcatgctgaccgccgaacgagtactcgaagtcttccaa
cagatcacagacgaagatattctcgtaataggaatggatccacaattcgctcggcctgaa
tggatgatttgtaccgtacttccagtcccaccacttgcagttcgtccagcagtcgtcaca
tttggatcggcaaagaatcaggacgatttgacccacaaactttcggatattatcaaaacc
aatcagcagttgcagagaaatgaggctaacggagccgcagcccatgtgctcaccgatgac
gtcaggcttttgcagttccacgtggcaactcttgtggacaattgtattccgggcctgccg
acggctacacagaagggtggacgaccgctgaaatcgatcaagcagcgactgaaaggaaaa
gaaggacgcattcgtggaaatttgatgggaaaacgtgtggatttctctgcgcgtaccgtc
atcacagccgatccgaacctgccgattgatacggtcggtgtgccgagaactattgcgcag
aatcttacgttcccggaaattgtgacaccttttaatgtggataagctgcaggagttggtc
aatcgtggtgatacacagtatcctggtgccaagtatattattagagaaaacggagctcga
gtggatcttcgctaccatccgcgtgccgccgatcttcacctccaaccgggataccgtgtc
gaacgtcacatgaaagatggcgatataatcgtctttaatcgtcaaccgactctccacaaa
atgtcaatgatgggacatcgtgtcaaaatcctcccatggagtacattccgaatgaatttg
tctgtcacatcaccgtacaatgcggatttcgatggagatgagatgaatcttcatttgcca
caaagtttggagacccgagccgagattgaggagatcgctatggtgccgagacaactcatc
actccacaagccaacaaaccagtcatgggtatcgtccaggatactctctgcgccgtccgt
atgatgacaaaacgtgacgtcttcattgactggccatttatgatggatctccttatgtat
ctaccaacttgggacggaaaagtcccccaaccagcaatcctgaagcccaaaccactttgg
accggaaaacaagtcttctcgcttatcattcctggaaatgtcaatgttctgagaacccac
agtacccatccagactctgaagattctggaccatacaaatggatttcccctggagatacc
aaagttatcatcgaacacggagagcttctatcgggaattgtgtgctccaaaactgtcgga
aaatcggctggtaacctgctccacgtcgtcacccttgagctcggatacgaaattgccgcc
aacttttattcgcacattcaaacggtcatcaatgcatggctcatacgagaaggtcacaca
atcggaatcggtgatacgattgccgatcaggcgacctatttggatattcagaatactatc
agaaaagccaaacaggatgtggtggatgtaattgagaaggctcacaatgatgatttggag
ccaacgcccggaaacacgttgagacagacttttgagaataaagtcaatcagattttgaac
gacgctcgtgatcgaacgggtagttctgcgcagaagagtttgtctgaattcaacaatttc
aagtcgatggtggtgtcaggatcgaagggatcgaagattaatatctcgcaggttatcgcg
tgtgtcggacaacaaaacgtcgaaggaaagcgtattccattcggtttccgtcatcgtaca
cttcctcacttcatcaaggacgactatggaccggaatccaaaggttttgtcgaaaattcc
tatctggccggcctaactccatcggaattcttcttccacgcaatgggaggacgtgaaggt
ctgattgatacagctgtaaagactgccgagactggatatattcaacgtcgtctaatcaag
gctatggaaagtgtaatggttaattatgatggaactgtgcgaaattcccttgcacaaatg
gttcaattgagatatggagaagatggtttggatggaatgtgggttgagaatcagaatatg
ccgacgatgaagcccaataatgccgtgtttgagagagatttcagaatggacctcaccgac
aacaaattccttcgcaaaaactactcggaagacgttgtgcgcgaaattcaagaatccgaa
gacggaatttcgctcgtcgaatcggaatggtcacagctggaagaggatcgtcgtctcctt
cgaaagatctttccacgtggtgacgctaagatcgtgcttccgtgtaatctgcagcgtctc
atttggaatgctcagaaaatattcaaagttgatctgcgcaagccggtgaatctctcgccg
ttgcacgtgatctccggagtccgtgagctttcgaaaaagctgatcattgtcagtggaaac
gacgagatttcaaagcaggctcagtacaatgcgacacttttgatgaatatcttgctccgt
tcgacactttgcaccaagaacatgtgcacaaaatcaaaactgaactctgaagcgttcgat
tggctcctcggagaaattgaatcgcgattccaacaggctattgctcaaccgggagagatg
gttggagcattggcggctcaatcgctcggagagccagctactcagatgacactcaacacg
ttccattatgcaggagtttcggcgaagaatgtgacacttggagtgccgagattgaaggag
attatcaatgtttcgaagacgttgaagactccgtcgttgactgtattcttgacgggagcg
gctgccaaggatccggaaaaggcgaaggatgtgttgtgcaagttggagcataccacgttg
aaaaaggtaacatgcaatacagcgatctactacgatcctgacccaaagaacacggtgatc
gccgaagacgaggaatgggtatcgattttctacgagatgccggatcacgatctatcgcgt
acctctccatggcttcttcggatcgaattggaccgaaaacgaatggtcgacaagaagttg
acgatggaaatgattgccgatcggattcacggaggcttcggcaacgatgttcacactatc
tacaccgacgataacgccgagaagctcgttttccgtctccgaatcgccggagaggataag
ggagaagctcaggaggagcaggtggataagatggaggacgacgtgttcctacgatgtatc
gaggcaaatatgttgtcagatttgacgcttcagggaatcccggcgatctcgaaggtctac
atgaatcagccgaatactgatgataagaagcgtatcattattacaccggagggagggttc
aagtcggtcgccgactggatccttgaaactgatggtaccgcgttgctccgtgtgctctcc
gaacgtcagattgatccggttcgaacgacatccaacgatatctgcgagatctttgaagtg
ctcggaatcgaggcggtcagaaaggctatcgagcgagaaatggacaatgtcatctcgttc
gacggatcctatgtcaattaccgacatttggcactgctttgtgatgtgatgactgcgaag
ggacacttgatggctattacgagacatggaatcaatcgtcaggaggttggagccctgatg
cgttgttcattcgaagaaacggtggatattttgatggaggcagccgtgcatgctgaggag
gatcctgtcaagggagtgtcggagaatattatgctcggacagctcgctcgttgtggtacc
ggatgctttgatttagtattggacgttgaaaagtgcaagtatggaatggaaatcccgcag
aatgttgtaatgggcggcgggttctatggaagctttgccggctcgccgagcaatcgcgag
ttctcgccggctcattcgccgtggaactctggagtcacaccgacgtatgctggagccgcc
tggtcgcctaccacaggtggaatgtcgcctggtgctggattttcaccggctggaaatacg
gatggaggagcatcgccgttcaatgaaggaggatggtctccggcatcgcctggggatcca
ctgggagcattgtctccgcgtactccgtcgtatggaggaatgtcacctggagtctactct
ccatcgtctccgcagttctcgatgacttcaccacactattcaccgacgtctcccagttat
tcgccaacttccccagccgctggacaatcgccagtgtcgccgagctactcgcctacctcg
ccgagctattctccgacttctcccagctattctccgacatcaccgagctactcgccaact
tctccgagctactcgccgacgtcgccgagctattctccaacatcgccaagttattcgccg
tcgtcgccaagctatagcccttcgtcgccgagctactcgccttcaagcccgagatattcg
ccaacgtcgccgacgtacagtccgacgagtccaacgtactctccaacatctccaacgtac
tcgccgacgtcgccaacatattctccaacatctccaagttatgaaagtggaggtggatac
agcccatcgagccccaagtactcgccgtcgtcgcctacctattcgcctacgtcgccgagc
tactcgccaacatcaccacagtactcgccgacgagtccgcagtacagtccgagctcgccg
acgtacactccatcctcgccgacatacaatccaacatctccacgcggattctcgtcgcca
cagtactctccgacgtcgcctacctattcgcctacgtcgcctagctacacgccgtcgtcg
ccgcagtactcgccgacgtcgcctacctacactccaagtccatcggagcagccaggaact
tcggctcagtactctccaacatcgccaacgtactctccgtcgtctccaacgtattcgcca
gcttcaccatcatacagtccaagctcgccgacttatgatccaaattcataa
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integrated database retrieval system