Caenorhabditis elegans (nematode): CELE_Y48B6A.3
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Entry
CELE_Y48B6A.3 CDS
T00019
Symbol
xrn-2
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03008
Ribosome biogenesis in eukaryotes
cel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CELE_Y48B6A.3 (xrn-2)
09123 Folding, sorting and degradation
03018 RNA degradation
CELE_Y48B6A.3 (xrn-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cel03021
]
CELE_Y48B6A.3 (xrn-2)
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_Y48B6A.3 (xrn-2)
03009 Ribosome biogenesis [BR:
cel03009
]
CELE_Y48B6A.3 (xrn-2)
03016 Transfer RNA biogenesis [BR:
cel03016
]
CELE_Y48B6A.3 (xrn-2)
Transcription machinery [BR:
cel03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CELE_Y48B6A.3 (xrn-2)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
CELE_Y48B6A.3 (xrn-2)
Ribosome biogenesis [BR:
cel03009
]
Eukaryotic type
Pre-60S particles
RNases
CELE_Y48B6A.3 (xrn-2)
Transfer RNA biogenesis [BR:
cel03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
CELE_Y48B6A.3 (xrn-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
CLIP1_ZNF
Motif
Other DBs
NCBI-GeneID:
175071
NCBI-ProteinID:
NP_496958
WormBase:
WBGene00006964
Ensembl:
WBGene00006964
UniProt:
Q9U299
Structure
PDB
LinkDB
All DBs
Position
II:14155768..14166030
Genome browser
AA seq
975 aa
AA seq
DB search
MGVPAFFRWLTKKYPATVVNANEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIH
PCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYIH
DRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIML
GIATHEANFNIIREEFVPNQPRACDLCGQYGHELKECRGAENETDLGDDYCKPEQREKNF
IFLRIPVLREYLEKELSMPNLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIREGAID
RLIKLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEIFKRRQQDEERFQENQRNK
KARMQMYGGGGRGGRGRGRGRGQQPAFVPTHGILAPMAAPMHHSGESTRQMASEARQTAM
KFTNDANETAAANLKALLNVKGEESPADIASRKRKAEQPLIKPEEEEDEGPKDDIRLYES
GWKDRYYRAKFDVGSDDIEFRHRVAWAYVEGLCWVLRYYYQGCASWDWYFPYHYAPFASD
FETVGEFQPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLMIQDDSPIIDLYPADFR
IDLNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQRNTRGPNRIFIGRNHKSFE
FFQQVAESKSDDLVPLDPTLLNGVSGKIAYDSTATAPGLPFVSPVNHDECQDLPTNCGIC
VLYEDPEYPQDYIFPALRLDGAKEPEKTLKPDDWNDRRDGRYQPQVGFNRNAPRGSLDQS
GHRQVHHYVRGGGGGGGGYRGNSYDDRRGGGGGGGGYNDRQDFGRNYGGRDGGGPQRYHD
QQQQRQGGYQGGGYGGGYGGGGGGGGGGGGGSYHQPYNQDQRRGGRGGGGGPPGYQRPPY
RGGGGGGYHGNSSWR
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgggagttcccgcattcttcagatggttgactaaaaagtatccggcaaccgtggtgaat
gccaatgaagatcgtcagcgagaccaggatggcaaccgggtccccgtagattgtacacag
cccaatccgaatttccaggagtttgataatctatacctggatatgaacggtattatccat
ccgtgcacccatccagaagacaggccggctccgaagaacgaagatgagatgttcgcgctc
attttcgagtacatcgatcgcatttattcgattgtcagaccgcgaaggcttctctatatg
gcgatcgatggagttgctccgcgagccaagatgaaccagcagcgaagtcgtcgattccgg
gcgagtaaagagatggctgaaaaggaggcgagcatcgaagagcaaagaaatcgattgatg
gccgaaggcatcgctgtgccaccgaaaaagaaagaagaagctcatttcgatagtaactgt
attactcctggaacaccatttatggctcgactcgccgatgctcttcgatattatattcat
gatcgggtcactaatgacgcgtcatgggctaatattgagatcatcctctccgacgcgaat
gttcccggcgaaggcgagcacaagatcatggactacgtccgaaagcaacgtggcaacccg
gctcacgacccgaacaccgtccactgcctctgcggagccgacgccgaccttattatgctc
ggaatcgccacccacgaggccaacttcaatattatccgagaggagttcgtgccgaatcag
ccgcgggcttgtgatctatgcggtcagtacggtcatgagctgaaggagtgtagaggcgcc
gaaaatgagaccgatttgggcgatgactactgtaagccggagcagcgagagaagaatttc
atttttctacggatcccggtgctcagggagtacttggaaaaggagctctcaatgccgaat
cttccatttaaattcgacgtcgagcgggctctggatgattgggttttcctgtgcttcttc
gtcggaaacgacttccttccacatttaccatcgctcgagatccgagaaggggcaattgac
agactgattaagctgtataaggagatggtctaccagatgaaaggttatctgacaaaggac
gggatcccggagctcgatcgggtcgagatgattatgaaggggctcggacgcgtcgaagat
gagattttcaagcgaagacagcaggatgaggagcgattccaggaaaatcagcgaaacaag
aaagcgagaatgcagatgtacggaggaggaggaagaggaggtcgtggtcgtggtagagga
agaggtcaacaaccggcttttgtgccgacgcacgggattctggctccgatggcggctccg
atgcatcattcgggagagtcgacgaggcagatggcctcggaagccaggcagacggccatg
aagttcaccaacgatgccaatgaaacggctgcggcgaatttgaaggctttgctcaatgtg
aaaggtgaagaatcgccagcagacattgcgtcaagaaaacgaaaagccgagcagccactg
ataaagcctgaagaagaggaagatgaaggaccaaaagatgacattcgtctctacgaatca
ggctggaaggatcgatattaccgagcgaaattcgacgtcggatccgacgatatcgagttt
cggcaccgtgtcgcgtgggcgtatgtggagggtctctgctgggtactacggtactattat
caaggatgtgccagctgggattggtatttcccgtatcattatgcaccgtttgccagcgat
ttcgagactgtcggagagtttcagcccgattttacgaggcctaccaagccgttcaatccg
ttggagcagctgatgagtgtttttccggctgcgtcgaaacaacatctcccagtggaatgg
caaaagctgatgattcaagacgattctccaattatcgatctctatccagcagattttcgc
atcgatctcaacggaaagaagtacgcgtggcaaggagttgctcttctgccatttgtcgat
gaaactcgccttctcgccaccctacaatccgtctatccaacactgaccgccgaggaaaag
caacgaaatacacgtggaccgaatcgaattttcattggacggaatcacaagtcgttcgag
ttctttcaacaagtcgccgagtcgaaatccgatgatttggttccactggatccgacgctt
ttgaacggagttagcggaaaaatcgcctatgattctacggcaacagcgcccggattgccg
ttcgtatcgcctgtcaatcacgatgaatgccaggatttgccgaccaactgcggaatatgt
gtgctctacgaagatcccgagtacccacaagactacatattcccggcactccgtctcgac
ggagccaaggagcccgagaaaacgctgaaacccgacgactggaatgatagacgagacggg
cggtatcagccgcaagtgggcttcaatcggaacgcgccacgtggaagcctggatcaatcg
ggccatcgacaggtgcatcactatgtgagaggtggtggtggcggcggcggcggataccga
ggaaatagctatgatgatcggagaggcggtggtggtggtggtggtggatacaacgatcgt
caagatttcggccgaaactacggaggaagagacggtggaggtccccagagataccatgat
cagcagcagcagcgtcaaggaggctatcaaggaggcggatatggaggcggttatggcggc
ggcggcggaggtggtggtggtggtggtggaggatcctaccaccagccgtacaatcaggat
cagagacgtggaggacgaggtggtggtggtgggccaccgggatatcagagaccaccgtat
cgaggtggcggaggtggaggctatcacggaaattcatcatggagataa
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integrated database retrieval system
