Caenorhabditis elegans (nematode): CELE_ZK593.7
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Entry
CELE_ZK593.7 CDS
T00019
Symbol
lsm-7
Name
(RefSeq) Sm domain-containing protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03018
RNA degradation
cel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CELE_ZK593.7 (lsm-7)
09123 Folding, sorting and degradation
03018 RNA degradation
CELE_ZK593.7 (lsm-7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_ZK593.7 (lsm-7)
03041 Spliceosome [BR:
cel03041
]
CELE_ZK593.7 (lsm-7)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CELE_ZK593.7 (lsm-7)
mRNA degradation factors
5'-3' decay
Lsm complex
CELE_ZK593.7 (lsm-7)
Spliceosome [BR:
cel03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CELE_ZK593.7 (lsm-7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
177988
NCBI-ProteinID:
NP_502034
WormBase:
WBGene00003081
Ensembl:
WBGene00003081
UniProt:
Q23543
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All DBs
Position
IV:10933502..10934189
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AA seq
104 aa
AA seq
DB search
MSKDEGKRKKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQ
NPSVVGDETRQLGLIVARGTAITVVSPADGLEQIANPFATQEEE
NT seq
315 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagacgaaggaaaacgaaagaaggagtctgtcgttgatctcaccagatttctc
gacaaagagattcgcgtcaagttccaaggaggacgtgaagcaagtggcgtgcttcgagga
ttcgatcagttgctcaatatggttcttgatgactgccgcgagtatctccgtgatccacaa
aatccttcggtcgtcggtgatgagacaagacaactgggtcttattgtggctcgcggaaca
gcaattacagtagttagcccagcagatggactcgagcaaatcgccaatccattcgcaacc
caggaagaagaataa
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