Caenorhabditis elegans (nematode): CELE_F43G9.5
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Entry
CELE_F43G9.5 CDS
T00019
Symbol
cfim-1
Name
(RefSeq) Cleavage and polyadenylation specificity factor subunit 5
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CELE_F43G9.5 (cfim-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_F43G9.5 (cfim-1)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
CELE_F43G9.5 (cfim-1)
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
172657
NCBI-ProteinID:
NP_492334
WormBase:
WBGene00009668
Ensembl:
WBGene00009668
UniProt:
Q93716
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All DBs
Position
I:8615388..8616420
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AA seq
227 aa
AA seq
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MEDIWPTIERTTISASVPEAPANFDEKPPFNRTINVYPLTNYTFGTKDAQAEKDKSVPER
FKRMKDEYEVMGMRRSVEAVLIVHEHSLPHILLLQIGTTFYKLPGGELELGEDEISGVTR
LLNETLGRTDGETNEWTIEDEIGNWWRPNFDPPRYPYIPAHVTKPKEHTKLLLVQLPSKS
TFCVPKNFKLVAAPLFELYDNAAAYGPLISSLPTTLSRFNFIFNDSN
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atggaagacatctggccaacaatcgaaagaacaacaatttcagcatctgtgcccgaggct
ccagcgaactttgatgaaaaacctccgttcaatcgaacaatcaacgtgtatccgttgact
aattacacatttggtactaaagatgcacaagcagaaaaagacaaatcagttccagaaagg
ttcaaacgaatgaaagacgaatatgaagtgatgggaatgcgtagatcagttgaagcggtg
cttattgttcatgagcactcacttccacatatcctactcctgcagattggtaccaccttt
tataaattgccgggtggagaattggaacttggtgaggatgagatatctggagtcacacgt
cttctaaacgagacactcggaagaaccgatggggagacaaacgaatggacaatcgaggat
gagataggcaactggtggcgaccaaactttgatcctccccgttacccgtacatccctgcg
cacgtgacaaaacccaaggagcacaccaagctgttgcttgttcagttgccctcaaaatca
acattctgcgttcccaaaaacttcaaactcgtcgcagctccactctttgaactttatgac
aacgcagccgcctatggaccactgatttcctctcttccaaccactctttcgagatttaat
ttcattttcaatgactccaactaa
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