Caenorhabditis elegans (nematode): CELE_F09D1.1
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Entry
CELE_F09D1.1 CDS
T00019
Symbol
usp-39
Name
(RefSeq) ubiquitinyl hydrolase 1
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CELE_F09D1.1 (usp-39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cel03041
]
CELE_F09D1.1 (usp-39)
Spliceosome [BR:
cel03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
CELE_F09D1.1 (usp-39)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
173606
NCBI-ProteinID:
NP_494298
WormBase:
WBGene00017280
Ensembl:
WBGene00017280
UniProt:
O44787
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Position
II:2565275..2575930
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AA seq
602 aa
AA seq
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MTNEEPKSPEKVERRRSTQEDSEKDKKRSRDDRKTEKRTHDRDRKRNRSRSRSRSRSPKR
SRRDKKEEKQEQEEEDGEIRDTTPPAPEKPRQLTARELERQRIIEEELKSGKHDEHDDDP
VWSMKKAQAEKKSRMCPYLDTIDRSVLDFDFEKQCSVSLSHQNVYACMVCGKYFQGRGTN
THAYTHALETDHHVFLNLQTLKFYCLPDNYEVIDPSLEDIKYVLKPTYTKEMIASIDKQS
KMVRAYDDSTYFPGVVGLNNIKANDYCNAILQALSAVRPLRNWFLKESNYTSIKRPPGDK
LTLLPQRFGELIRKLWNPRALRTHVSPHEMLQAVVVCSNKKFQFIKQNDAADFMLFLLTT
LHSALNGTDKKPSIISKTFRGRMRQYSRRVIPAEDTDEEKYMKLRMPEYQEKVIESPFLY
LTLDLPSAPLYRDVQLQNIIPQVPLSTLLEKFDGKTEKEYPTYNDNNIMKRFELLQLPDF
LIITYKRFQKNQWFVEKNPTIVNFPIANVDFYDCLAKDARANHKYTTYDLVANVVHEGTF
KDGNYRIQIVHEGSGKWFELEDLHVKDLLPQMIVLAESYIQIWRLNKEQTRDERAEGEPM
QN
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacgaagagccaaaatctcccgaaaaggtggaacgccggcggtcaacgcaggaa
gattcggaaaaagacaagaaacgttcgagagacgatagaaaaaccgagaaaaggactcac
gatagggataggaagaggaataggagccgatcgagatctagatcaaggtccccaaagcgc
tcgagacgggataaaaaagaggaaaagcaagagcaagaggaagaggatggcgagatccgc
gatacaactccaccggctccggaaaagccgcgccagctcaccgccagagagctcgagagg
cagcgaattattgaagaggagcttaaaagcggaaagcacgatgagcacgacgacgatccg
gtttggtcaatgaaaaaggcgcaagcggagaaaaaaagtcgaatgtgcccgtatttggac
actattgatagatcagttttggactttgatttcgagaaacagtgctccgtttcactttcc
catcaaaatgtgtacgcctgcatggtttgcggcaaatattttcagggccgcggtacaaac
acccacgcatacacccacgcactggagactgatcatcacgtttttctgaatctacaaaca
ctaaaattctactgtcttccagacaattatgaagttattgatccatcattggaggatatt
aaatatgtgctaaagccgacgtataccaaagaaatgattgcttcaattgataagcagtca
aaaatggtccgcgcctacgacgattcgacctactttccgggcgttgttggactcaacaat
atcaaggcaaacgactactgtaacgctatacttcaggctctgtcagcggtccgtccactg
cgtaattggtttctaaaagaatcaaattacacttcaatcaaacgtccaccaggtgataag
ctcacattgctcccacaacgctttggagagctcatcagaaagctatggaatccacgtgca
ctccgtacacacgtctcacctcatgaaatgcttcaggcggtcgtcgtgtgctccaacaag
aaatttcaatttattaagcaaaatgatgcggcggattttatgcttttcctgctcacaaca
cttcattcggctctgaatggaactgacaagaagccgtcgatcatttcaaaaacattccgc
ggtcgaatgcgtcaatattcacgtcgagtaataccagctgaagatacagacgaagagaaa
tatatgaaacttcgaatgccagaatatcaggaaaaagtgattgaatcaccatttttgtac
ctaactctggatcttccatcggctccactctatcgtgatgttcaactgcagaacattatt
ccacaagtaccactgagcactttattggagaaatttgatggaaaaactgagaaggaatac
ccaacgtacaacgacaataatatcatgaaacgcttcgaattgctacaactacccgatttt
ctcataatcacctacaaaagattccagaaaaatcagtggttcgtcgaaaaaaacccgact
atcgtcaattttcccattgcgaacgttgatttttacgattgcctggctaaggatgcccgt
gctaatcataaatacactacgtatgatcttgtggcaaatgtcgtacacgaaggaactttt
aaagatggaaattatcgaattcagattgttcatgagggctccggaaaatggtttgaactc
gaggatttgcacgtgaaggaccttttgccgcagatgattgtgctcgccgagtcgtatatt
caaatttggcggcttaacaaggagcaaactagagacgaacgtgccgagggagagcccatg
cagaattag
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