Caenorhabditis elegans (nematode): CELE_W03F9.5
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Entry
CELE_W03F9.5 CDS
T00019
Symbol
ttb-1
Name
(RefSeq) Transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CELE_W03F9.5 (ttb-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cel03021
]
CELE_W03F9.5 (ttb-1)
Transcription machinery [BR:
cel03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
CELE_W03F9.5 (ttb-1)
Prokaryotic type
Archaeal type
TFB
CELE_W03F9.5 (ttb-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
TF_Zn_Ribbon
Cyclin_N
Brucella_OMP2
RB_B
Motif
Other DBs
NCBI-GeneID:
178544
NCBI-ProteinID:
NP_503146
WormBase:
WBGene00006648
Ensembl:
WBGene00006648
UniProt:
O16991
LinkDB
All DBs
Position
V:156825..166866
Genome browser
AA seq
306 aa
AA seq
DB search
MSAPVQCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVG
APENPLLSGGDLSTTIAVGFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHL
PRNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKE
IGRCFKIIVRSLETNLEQITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDLVAGRTP
ISIAAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKLLYPKALELFPKDFRFVTPI
DALPNS
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctccagtccagtgtccgatccatccagacgtgcatttgatcgaagatcaccgt
gccggggatctggtctgtccggcgtgcggcttggtcgtcggtgatcgtctggtcgacgtc
ggaaccgaatggcgttcattttccaacgaacgtagtggaaatgacccatctcgtgtcgga
gcaccggaaaatccgctgctcagcggcggagatttgagcacaactatcgccgtgggcttt
ggcggctccgacagtgataatagtttggcgaatgctcaaagaaagtcaatgaacaatacg
gatcgtcaaatgaccgccgcgatgagccttattagggaaatgagcgagagaattcacttg
ccaagaaatattcaggacagcgcctcccgtatattcaaagatgtgctcgaaagtaaagct
ctccgcggaaaaaacaacgaggcacaggcggccgcgtgcctatacattgcgtgccgaaaa
gacggcgttccccgtactttcaaggaaatttgtgcggtttctcgagtctcgaaaaaggaa
attggacgatgtttcaagattatcgtacggagtttggagacgaatctcgagcaaattaca
tctgcagattttatgtctcggttctgtggaaatctatcgctacccaactcgattcaggcg
gcagccacgagaattgcaaaatgcgcggtggatatggatttggtcgctggccgtaccccc
atctcaattgccgccgccgcaatctacatggcatcacaggcgtctgcagaaaaacggtct
gccaaagaaattggtgacgtggcaggagccgccgagatcaccgtgcgtcagacttacaag
ctgctctacccgaaggcactcgagcttttcccaaaagatttccgctttgtcactccaatc
gacgctcttccaaactcataa
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