KEGG   Caenorhabditis elegans (nematode): CELE_Y34D9A.10
Entry
CELE_Y34D9A.10    CDS       T00019                                 
Symbol
vps-4
Name
(RefSeq) vesicle-fusing ATPase
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03250  Viral life cycle - HIV-1
cel04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    CELE_Y34D9A.10 (vps-4)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    CELE_Y34D9A.10 (vps-4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cel04131]
    CELE_Y34D9A.10 (vps-4)
   03400 DNA repair and recombination proteins [BR:cel03400]
    CELE_Y34D9A.10 (vps-4)
Membrane trafficking [BR:cel04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    CELE_Y34D9A.10 (vps-4)
DNA repair and recombination proteins [BR:cel03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    CELE_Y34D9A.10 (vps-4)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_14 IstB_IS21 RuvB_N AAA_22 AAA_5 DUF815 AAA_18 AAA_2 AAA_17 AAA_33 nSTAND3 PhoH RNA_helicase TPR_16 AAA_24 Mg_chelatase AAA_7 TPR_1 AAA_28 Parvo_NS1 bpMoxR Sigma54_activ_2 TPR_7 TPR_11 TPR_2
Other DBs
NCBI-GeneID: 189590
NCBI-ProteinID: NP_490816
WormBase: WBGene00021334
Ensembl: WBGene00021334
UniProt: Q9BL83
LinkDB
Position
I:complement(1053894..1066899)
AA seq 430 aa
MSVPALQKAIELVTKATEEDTAGRYDQALRLYDQAIEYFLHAIKYESQGDKQRNAIRDKV
GQYLNRAEQIKTHLKDGKTQKKPVKDGKDDSDEDEDKKKFQDKLSGAIVMEKPNVKWTDI
AGLEGAKEALKEAVILPIKFPQLFTGNRKPWQGILLFGPPGTGKSYIAKAVATEAGESTF
FSISSSDLMSKWLGESEKLVKNLFALAREHKPSIIFIDEIDSLCSARSDNESESARRIKT
EFMVQMQGVGLNNDGILVLGATNIPWILDSAIRRRFEKRIYIPLPDIHARKEMFRIDVGK
NYNTLTDQDFKVLAERCEGYSGYDISILVKDALMQPVRRVQSATHFKHVSGPSPKDPNVI
AHDLLTPCSPGDPHAIAMNWLDVPGDKLANPPLSMQDISRSLASVKPTVNNTDLDRLEAF
KNDFGQDGQE
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgtcggttccggcacttcagaaggccatagaattggtgacaaaagccaccgaggaggat
acagccggcagatacgaccaagcgctgagattatacgatcaggccattgaatacttcctt
catgcgataaaatacgagtcacaaggcgataaacagcgtaatgcgattcgtgacaaagtc
gggcagtatttgaatcgcgccgagcagatcaaaacccatctgaaagacggaaaaacgcag
aaaaagccggtgaaagacgggaaagacgattccgacgaggatgaggacaagaaaaagttt
caggacaaactgtcgggcgcaattgtgatggagaagccgaatgtcaagtggaccgatatt
gcaggacttgagggagcgaaagaggcgctcaaggaggccgtcattcttccaatcaaattt
ccacagcttttcactggaaaccgcaagccgtggcaaggaattttgctcttcggaccaccg
ggaaccggtaaatcgtacattgcaaaagccgtcgccaccgaggccggcgaatcgacgttc
ttctcgatttcctcgtccgatttgatgtcgaaatggctcggcgagtcggagaagcttgtc
aagaatctgtttgcgttggcccgcgagcacaagccatcgattatttttattgatgagatc
gattcgctctgctcggcccgttcggataacgaaagtgaaagtgcacgacgcatcaagacc
gaattcatggttcaaatgcagggtgtcggcctgaacaatgacggaattctcgtcctaggc
gccacgaatatcccatggattttggattcggctattcgaagacgtttcgagaagcgaatc
tacattccactgcccgacattcacgctcgcaaagaaatgttccgaatcgacgttggcaag
aactacaacacgctgacagatcaggatttcaaggtgctcgccgagcgatgtgaaggatat
tcgggttatgatatcagtattcttgtcaaggatgcactcatgcaacccgtacgacgagta
caatcggccacacatttcaaacacgtcagcggtccatcaccaaaggatccaaatgtgatt
gcacatgatctactgacaccgtgcagtccaggagatccacacgcgattgcaatgaattgg
ttggatgttccaggggataagctggcgaatccaccactttccatgcaagacatttcgcgt
tcgctggcatccgtaaaaccgacagtcaacaacactgatctcgaccgtttggaggcgttc
aaaaacgatttcggacaggatggacaggaataa

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